YRC Public Data Repository - Protein Structure Prediction

Protein:	YML003W
Organism:	Saccharomyces cerevisiae
Length:	290 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML003W.

Description	E-value	Query Range	Subject Range
U5071_YEAST - UPF0507 protein YML003W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML003W PE=3 SV=... YML003W - Putative protein of unknown function	0.0	[1..290]	[1..290]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVYHLPTLL NPLVNAIFNC PEPERSPLKK LFANLKTRRF ILLAPPSEYL LNYHDVKSKL  60
   61 PLHDLCYNAE FINSYILLMT ENSYINTNSR DSHYETLDGK TVVIQWKNNV IHALNGFHIR 120
  121 RRLKILETKI LPNFNDYFEG AADFIILFID QPLNCEFVPN DYLQCFHNYE KIPKNAHAMP 180
  181 NLSIDSFQQE RSSFENILHI HPARLTQLGQ LFSSYRTLAP GDDPSRSIFE SIVQQAFDGM 240
  241 KSDSLFKNFS NLYDLIHDYF ELNLYDDIWS RLTTHFKGHE VDTEKINIFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [154-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NCEFVPNDYL QCFHNYEKIP KNAHAMPNLS IDSFQQERSS FENILHIHPA RLTQLGQLFS  60
   61 SYRTLAPGDD PSRSIFESIV QQAFDGMKSD SLFKNFSNLY DLIHDYFELN LYDDIWSRLT 120
  121 THFKGHEVDT EKINIFQ