YRC Public Data Repository - Protein Structure Prediction

Protein:	TDA5
Organism:	Saccharomyces cerevisiae
Length:	326 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDA5.

Description	E-value	Query Range	Subject Range
TRNH5_ARATH - Tropinone reductase homolog At2g29260, chloroplastic OS=Arabidopsis thaliana GN=At2g29260 PE=2 SV=1	5.0E-84	[28..322]	[21..312]
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	2.0E-81	[67..321]	[2..243]
gi\|25283158 - pir\|\|C83961 3-oxoacyl-(acyl-carrier protein) reductase fabG [imported] - Bacillus halodurans (strain... gi\|10175111, gi\|... - gi\|15615054\|ref\|NP_243357.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Bacillus halodurans C-125],...	1.0E-80	[68..324]	[2..246]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	5.0E-80	[68..324]	[2..246]
gi\|1502421 - gi\|1502421\|gb\|AAC44307.1\| 3-ketoacyl-acyl carrier protein reductase gi\|1502421\|gb\|AA... - 3-ketoacyl-acyl carrier protein reductase	4.0E-77	[68..324]	[2..246]
gi\|15080872 - gi\|15080872\|gb\|AAK83686.1\|AF237573_1 3-oxoacyl-acyl-carrier protein reductase precursor [Plasmodium ...	8.0E-77	[36..321]	[19..298]
gi\|221313791 - gi\|221313791\|ref\|ZP_03595596.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221318715 - gi\|221318715\|ref\|ZP_03600009.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221322986 - gi\|221322986\|ref\|ZP_03604280.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis GN=fabG PE=3 SV=3 FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis (strain 168) GN=fabG PE=3 SV=3	9.0E-77	[68..324]	[2..246]
gi\|11351851 - pir\|\|G83378 probable short-chain dehydrogenase PA2142 [imported] - Pseudomonas aeruginosa (strain PA... gi\|9948159, gi\|1... - gi\|9948159\|gb\|AAG05530.1\|AE004641_9 probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]...	5.0E-76	[51..321]	[23..281]
gi\|16800987 - gi\|16800987\|ref\|NP_471255.1\| hypothetical protein lin1921 [Listeria innocua Clip11262] gi\|25283285, gi\|... - pir\|\|AG1672 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria innocua (st...	6.0E-76	[68..324]	[3..247]

Back

Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIDCLCRWV VLPLLRYPLL VALVLRWSLS DSISICLTIY TLLINAFLIA NSYIKRSGQV  60
   61 AWKSLREFKN GIVLITGGSK GLGRAIVSQL LQDYSNLTIL NVDICPSSVR NTRVKDLICD 120
  121 LSDDEEVAAL LNLLKRKYKN EIRLIVNNAG VRANFTGFNG MERDNLDKIF KINTFAPLQF 180
  181 IQELAPSRHS TRQCYIVNIA SILGILTPAK VAAYAASKAA LIAFHQSYSF ELQNEGVRNI 240
  241 RTLLVTPGQL NTEMFAGFKP PRQFFAPVID ITTLAAKIVR YCELGQRGQL NEPFYCSFAH 300
  301 LLMCVPYSLQ RIVRSFSRID CCLPDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	182.9691
Match:	1i01A_
Description:	beta-keto acyl carrier protein reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits