YRC Public Data Repository - Protein Structure Prediction

Protein:	PUN1
Organism:	Saccharomyces cerevisiae
Length:	263 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUN1.

Description	E-value	Query Range	Subject Range
gi\|151940933 - gi\|151940933\|gb\|EDN59315.1\| conserved protein [Saccharomyces cerevisiae YJM789] PUN1_YEAST - Protein PUN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUN1 PE=1 SV=1 PUN1 - Putative protein of unknown function; localizes to bud and cytoplasm; co-localizes with Sur7p in pun... gi\|190405452 - gi\|190405452\|gb\|EDV08719.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	3.0E-80	[1..263]	[1..263]
gi\|164426759, gi... - gi\|164426759\|ref\|XP_961328.2\| hypothetical protein NCU03601 [Neurospora crassa OR74A], gi\|157071466\|... gi\|18376388 - gi\|18376388\|emb\|CAD21277.1\| conserved hypothetical protein [Neurospora crassa]	1.0E-61	[8..241]	[59..280]
SPAC15A10.09c - SUR7 family protein PUN1_SCHPO - SUR7 family protein pun1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pun1 PE=3 SV=1	1.0E-53	[19..241]	[25..276]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNFFTLFFA AIFSLGALIL AIVACAGSTK NYSPINKIYC AELDLSQMKV STVLPSLSSA  60
   61 TLSSLGLPSY INIGLWSYCT VDSSHNIQSC SSPHGIQNFN LSSLVYDNIN NNEALELMDS 120
  121 VASVVLPEKL KSKMTYYNNL VKCMFITILI GIVLTFVNLV FNVLRWIIHI RPLTWFGAFF 180
  181 SFFAFAALLV SIGSCLGTYS YIKYILKHNY SDYGISMSIG RNYQGLMWGA VVGALLNFIL 240
  241 WCSVRSRPTV IYANAPIEEK PLI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits