YRC Public Data Repository - Protein Structure Prediction

Protein:	CTR3
Organism:	Saccharomyces cerevisiae
Length:	241 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTR3.

Description	E-value	Query Range	Subject Range
CTR3 - High-affinity copper transporter of the plasma membrane, acts as a trimer; gene is disrupted by a Ty... CTR3_YEAST - Copper transport protein CTR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR3 PE=1 ...	6.0E-73	[1..241]	[1..241]
Ctr1C-PA - The gene Copper transporter 1C is referred to in FlyBase by the symbol Dmel\Ctr1C (CG15551, FBgn0062...	3.0E-51	[1..212]	[39..260]
gi\|45387849, gi\|... - gi\|45501115\|gb\|AAH67161.1\| Solute carrier family 31 (copper transporters), member 1 [Danio rerio], g...	3.0E-35	[2..213]	[22..176]
COPT1_RAT - High affinity copper uptake protein 1 OS=Rattus norvegicus GN=Slc31a1 PE=2 SV=1	3.0E-32	[2..213]	[10..175]
gi\|7573515 - gi\|7573515\|emb\|CAB87806.1\| copper transport protein 1 [Candida albicans]	4.0E-31	[1..209]	[36..232]
SLC31A1 - solute carrier family 31 (copper transporters), member 1 gi\|114626217 - gi\|114626217\|ref\|XP_520197.2\| PREDICTED: solute carrier family 31 (copper transporters), member 1 is... gi\|123995913, gi... - gi\|123995913\|gb\|ABM85558.1\| solute carrier family 31 (copper transporters), member 1 [synthetic cons...	2.0E-30	[2..213]	[22..178]
COPT1_PIG - High affinity copper uptake protein 1 OS=Sus scrofa GN=SLC31A1 PE=2 SV=1	4.0E-30	[1..213]	[18..177]
gi\|84996043 - gi\|84996043\|ref\|XP_952743.1\| surface protein precursor (TaSP) [Theileria annulata strain Ankara] gi\|65303740, gi\|... - gi\|65303740\|emb\|CAI76117.1\| surface protein precursor (TaSP), putative [Theileria annulata], gi\|1849...	6.0E-29	[79..240]	[160..314]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMGGSSSTA AKKATCKISM LWNWYTIDTC FIARSWRNDT KGKFAGSCIG CFALVVVAQW  60
   61 LTRFSRQFDV ELLKR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKIKHLASYS PEEYVVKCGE EDAKSDIEEL QGFYNEPSWK TTLISLQKSF IYSFYVWGPR  60
   61 RLNEPEDDLL KKVLSCCTLI TPVDLYPTFL DHMIRVTIFV LQWGLSYIIM LLFMYYNGYI 120
  121 IISCLIGAIV GRFIFCYEPL GSLGANGSAQ GTVSYDKESD DRKCCL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits