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View Structure Prediction Details

Protein: YLR410W-A
Organism: Saccharomyces cerevisiae
Length: 438 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR410W-A.

Description E-value Query
Range
Subject
Range
YGR161C-D - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YG13B_YEAST - Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
539.0 [0..1] [431..1]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLHQNP HSLHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV NSQQETTPGT  60
   61 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120
  121 YYQPDPHYPL PQYIPPLSTS SPDPIDLKNQ HSEIPQAKTK 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 77.21467
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGNNVLPPHT LTSEENFSTW VKFYIRFLKN SNLGDIIPND QGEIKRQMTY EEHAYIYNTF  60
   61 QAFAPFHLLP TWVKQILEIN YADILTVLCK SVSKMQTNNQ ELKDWIALAN LEYDGSTSAD 120
  121 TFEITVSTII QRLKENNINV SDRLACQLIL KGLSGDFKYL RNQYRTKT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [329-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NMKLSQLFAE IQLIYDENKI MNLNKPSQYK QHSEYKNVSR TSPNTTNTKV TTRNYHRTNS  60
   61 SKPRAAKAHN IATSSKFSRV NNDHINESTV SSQYLSDDNE LSLRPATERI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle