YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR408C
Organism:	Saccharomyces cerevisiae
Length:	122 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR408C.

Description	E-value	Query Range	Subject Range
BL1S1_CANGA - Biogenesis of lysosome-related organelles complex 1 subunit BLS1 OS=Candida glabrata (strain ATCC 20... gi\|49529089 - gi\|49529089\|emb\|CAG62753.1\| unnamed protein product [Candida glabrata]	97.0	[0..20]	[122..4]
BL1S1_KLULA - Biogenesis of lysosome-related organelles complex 1 subunit BLS1 OS=Kluyveromyces lactis (strain ATC... gi\|49640792 - gi\|49640792\|emb\|CAH02053.1\| KLLA0B02871p [Kluyveromyces lactis]	80.0	[0..26]	[120..8]
gi\|45190685, gi\|... - gi\|45190685\|ref\|NP_984939.1\| AER079Cp [Ashbya gossypii ATCC 10895], gi\|44983664\|gb\|AAS52763.1\| AER07... BL1S1_ASHGO - Biogenesis of lysosome-related organelles complex 1 subunit BLS1 OS=Ashbya gossypii (strain ATCC 108...	70.0	[0..22]	[104..2]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLTFSMCVN WIIVKMPNRS EELDRLLDKI INSPHRTEAS KTLQEIENNQ SYILNVQLKK  60
   61 LLRLHDDSFK NKCVSPINYM LEKYTPYMGH TEALQKEAEL VDRDLRILEM TYQLIEKNRN 120
  121 SK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits