YRC Public Data Repository - Protein Structure Prediction

Protein:	FLD1
Organism:	Saccharomyces cerevisiae
Length:	285 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLD1.

Description	E-value	Query Range	Subject Range
gi\|151940923 - gi\|151940923\|gb\|EDN59305.1\| conserved protein [Saccharomyces cerevisiae YJM789] FLD1 - Seipin protein involved in lipid droplet morphology, number, and size; proposed to be involved in li... SEI1_YEAST - Seipin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEI1 PE=1 SV=1 gi\|190405443 - gi\|190405443\|gb\|EDV08710.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	0.0	[1..285]	[1..285]

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Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINVSRPLQ FLQWSSYIVV AFLIQLLIIL PLSILIYHDF YLRLLPADSS NVVPLNTFNI  60
   61 LNGVQFGTKF FQSIKSIPVG TDLPQTIDNG LSQLIPMRDN MEYKLDLNLQ LYCQSKTDHL 120
  121 NLDNLLIDVY RGPGPLLGAP GGSNSKDEKI FHTSRPIVCL ALTDSMSPQE IEQLGPSRLD 180
  181 VYDEEWLNTI RIEDKISLES SYETISVFLK TEIAQRNLII HPESGIKFRM NFEQGLRNLM 240
  241 LRKRFLSYII GISIFHCIIC VLFFITGCTA FIFVRKGQEK SKKHS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [116-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTDHLNLDNL LIDVYRGPGP LLGAPGGSNS KDEKIFHTSR PIVCLALTDS MSPQEIEQLG  60
   61 PSRLDVYDEE WLNTIRIEDK ISLESSYETI SVFLKTEIAQ RNLIIHPESG IKFRMNFEQG 120
  121 LRNLMLRKRF LSYIIGISIF HCIICVLFFI TGCTAFIFVR KGQEKSKKHS