| Protein: | BDF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 686 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BDF1.
| Description | E-value | Query Range |
Subject Range |
|
|
497.0 | [0..1] | [671..1] |
|
|
383.0 | [0..6] | [673..93] |
|
|
358.0 | [0..130] | [669..8] |
|
|
337.0 | [0..127] | [668..4] |
|
|
332.0 | [0..99] | [664..1085] |
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MTDITPVQND VDVNGNNVND DVSSNLKRPI DQGDPSNGLA EEENPANNQL HLKKARLDGD 60
61 ALTSSPAGLA ENGIEGATLA ANGENGYNAT GSGAEDEQQG LKKEEGGQGT KQEDLDENSK 120
121 QELPMEVPKE PAPAPPPEPD MNNLPQNPIP K
|
| Detection Method: |  |
| Confidence: | 7.25 |
| Match: | |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [152-269] |
1 11 21 31 41 51
| | | | | |
1 HQQKHALLAI KAVKRLKDAR PFLQPVDPVK LDIPFYFNYI KRPMDLSTIE RKLNVGAYEV 60
61 PEQITEDFNL MVNNSIKFNG PNAGISQMAR NIQASFEKHM LNMPAKDAPP VIAKGRRS
|
| Detection Method: | |
| Confidence: | 31.259637 |
| Match: | PF00439 |
| Description: | Bromodomain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.962 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.962 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.960 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.959 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.959 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.957 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.957 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.956 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.953 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.951 | N/A | N/A | a.29.2 | Bromodomain |
|
Region A: Residues: [270-472] |
1 11 21 31 41 51
| | | | | |
1 SAQEDAPIVI RRAQTHNGRP KRTIHPPKSK DIYPYESKKP KSKRLQQAMK FCQSVLKELM 60
61 AKKHASYNYP FLEPVDPVSM NLPTYFDYVK EPMDLGTIAK KLNDWQYQTM EDFERDVRLV 120
121 FKNCYTFNPD GTIVNMMGHR LEEVFNSKWA DRPNLDDYDS DEDSRTQGDY DDYESEYSES 180
181 DIDETIITNP AIQYLEEQLA RMK
|
| Detection Method: | |
| Confidence: | 176.38764 |
| Match: | 1e6iA |
| Description: | GCN5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [473-527] |
1 11 21 31 41 51
| | | | | |
1 VELQQLKKQE LEKIRKERRL ARGSKKRGKR SKGRSGSKNA SSKGRRDKKN KLKTV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.391 | a.7.17 | Description not found. |
| View | Download | 0.369 | a.4.1 | Homeodomain-like |
| View | Download | 0.318 | a.4.1 | Homeodomain-like |
| View | Download | 0.284 | a.4.1 | Homeodomain-like |
| View | Download | 0.282 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.275 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.223 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.221 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.209 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [528-686] |
1 11 21 31 41 51
| | | | | |
1 VTYDMKRIIT ERINDLPTSK LERAIDIIKK SMPNISEDDE VELDLDTLDN HTILTLYNTF 60
61 FRQYESSSGA SNGLDGTSGV TRDASSLSPT SAGSRKRRSK ALSQEEQSRQ IEKIKNKLAI 120
121 LDSASPLSQN GSPGQIQSAA HNGFSSSSDD DVSSESEEE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.470 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.361 | N/A | N/A | a.118.20 | Description not found. |
| View | Download | 0.327 | N/A | N/A | c.151.1 | Description not found. |
| View | Download | 0.312 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.306 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.251 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.227 | N/A | N/A | a.118.1 | ARM repeat |
