YRC Public Data Repository - Protein Structure Prediction

Protein:	COX8
Organism:	Saccharomyces cerevisiae
Length:	78 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX8.

Description	E-value	Query Range	Subject Range
gi\|44983647 - gi\|44983647\|gb\|AAS52746.1\| AER062Cp [Ashbya gossypii ATCC 10895] gi\|44983647, gi\|... - gi\|45190668\|ref\|NP_984922.1\| AER062Cp [Ashbya gossypii ATCC 10895], gi\|44983647\|gb\|AAS52746.1\| AER06...	74.0	[0..4]	[76..3]
gi\|49640813 - gi\|49640813\|emb\|CAH02074.1\| KLLA0B03311p [Kluyveromyces lactis] gi\|50303479, gi\|... - gi\|50303479\|ref\|XP_451681.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640813\|emb\|CAH0207...	74.0	[0..29]	[78..24]
gi\|49650849 - gi\|49650849\|emb\|CAG77786.1\| YALI0F04103p [Yarrowia lipolytica] gi\|50555141, gi\|... - gi\|50555141\|ref\|XP_504979.1\| YALI0F04103p [Yarrowia lipolytica], gi\|49650849\|emb\|CAG77786.1\| unnamed...	60.0	[0..6]	[75..1]
gi\|49655438, gi\|... - gi\|50422411\|ref\|XP_459770.1\| hypothetical protein DEHA0E11242g [Debaryomyces hansenii CBS767], gi\|49... gi\|49655438 - gi\|49655438\|emb\|CAG88009.1\| DEHA2E10648p [Debaryomyces hansenii]	52.0	[0..8]	[78..18]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCQQMIRTT AKRSSNIMTR PIIMKRSVHF KDGVYENIPF KVKGRKTPYA LSHFGFFAIG  60
   61 FAVPFVACYV QLKKSGAF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.29243
Match:	PF02935.7
Description:	No description for PF02935.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits