YRC Public Data Repository - Protein Structure Prediction

Protein:	CCW14
Organism:	Saccharomyces cerevisiae
Length:	238 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCW14.

Description	E-value	Query Range	Subject Range
CCW14_YEAST - Covalently-linked cell wall protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=C... gi\|207342753 - gi\|207342753\|gb\|EDZ70417.1\| YLR390W-Ap-like protein [Saccharomyces cerevisiae AWRI1631] CCW14 - Covalently linked cell wall glycoprotein, present in the inner layer of the cell wall gi\|190405433 - gi\|190405433\|gb\|EDV08700.1\| hypothetical protein SCRG_04331 [Saccharomyces cerevisiae RM11-1a]	5.0E-32	[1..238]	[1..238]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-8	[68..218]	[1498..1650]
gi\|55742055 - ref\|NP_001007209.1\| coagulation factor V [Danio rerio] gi\|55742055, gi\|... - gi\|55742055\|ref\|NP_001007209.1\| coagulation factor V [Danio rerio], gi\|16200178\|emb\|CAC94896.1\| nove...	5.0E-7	[33..193]	[1073..1220]
MACF_MOUSE, MACF... - (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking family 7), Microtubule-actin c...	1.0E-6	[72..215]	[5173..5319]
gi\|219933076, gi... - gi\|221229969\|ref\|YP_002503385.1\| RNA polymerase sigma factor [Mycobacterium leprae Br4923], gi\|21993... gi\|15827492 - gi\|15827492\|ref\|NP_301755.1\| RNA polymerase sigma factor [Mycobacterium leprae TN] gi\|699190, gi\|45... - gi\|699190\|gb\|AAA62955.1\| rpoT [Mycobacterium leprae], gi\|4587111\|dbj\|BAA76621.1\| RpoT [Mycobacterium...	3.0E-6	[67..198]	[42..170]
gi\|4587113 - gi\|4587113\|dbj\|BAA76622.1\| RpoT [Mycobacterium leprae]	3.0E-6	[67..198]	[42..170]
gi\|20177447, gi\|... - gi\|728508\|dbj\|BAA08546.1\| 106.4KD protein [Nilaparvata lugens reovirus], gi\|20177447\|ref\|NP_619780.1...	1.0E-4	[86..215]	[776..907]
gi\|124800689, gi... - gi\|3845095\|gb\|AAC71810.1\| knob-associated histidine-rich protein [Plasmodium falciparum 3D7], gi\|168... gi\|7442254 - pir\|\|B71623 knob-associated His-rich protein PFB0100c - malaria parasite (Plasmodium falciparum)	2.0E-4	[80..209]	[447..587]
CG7987-PA, CG7987-PB - This gene is referred to in FlyBase by the symbol Dmel\CG7987 (CG7987, FBgn0038244). It is a protein...	2.0E-4	[84..203]	[912..1024]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRATTLLSSV VSLALLSKEV LATPPACLLA CVAQVGKSSS TCDSLNQVTC YCEHENSAVK  60
   61 KCLDSICPNN DADAAYSAFK SSCSEQNASL GDSSSSASSS ASSSSKASSS TKASSSSASS 120
  121 STKASSSSAS SSTKASSSSA APSSSKASST ESSSSSSSST KAPSSEESSS TYVSSSKQAS 180
  181 STSEAHSSSA ASSTVSQETV SSALPTSTAV ISTFSEGSGN VLEAGKSVFI AAVAAMLI

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	14.76
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits