| Protein: | CTF3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 733 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTF3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..733] | [1..733] |
|
|
4.0E-99 | [557..733] | [1..177] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MSLILDDIIL SLTNANERTP PQALKTTLSL LYEKSKQYGL SSPQLQALVR LLCETSIIDT 60
61 VTKVYIVENC FLPDGYLTKE LLLEIINHLG TPTVFSRYRI QTPPVLQSAL CKWLVHVYFL 120
121 FPVHSEREHN ISSSIWLHLW QFSFLQKWIT PLVIWQATTP VDVKPWKLSI IKRCAMHP
|
| Detection Method: |  |
| Confidence: | 2.1 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [179-251] |
1 11 21 31 41 51
| | | | | |
1 GYRDAPGSAT LILQRFQCLV GASSQITESI ITINCNRKTL KSHRNLKLDA HFLSILKRIL 60
61 SRAHPANFPA DTV
|
| Detection Method: | |
| Confidence: | 2.1 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [252-380] |
1 11 21 31 41 51
| | | | | |
1 QNTIDMYLSE IHQLGADSIY PLRLQSLPEY VPSDSTVSLW DVTSLEQLAQ NWPQLHIPND 60
61 VDYMMKPSLN SNVLLPRKVM SRDSLKHLYS SIILIKNSRD ESSSPYEWCI WQLKRCFAHQ 120
121 IETPQEVIP
|
| Detection Method: | |
| Confidence: | 2.1 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [381-598] |
1 11 21 31 41 51
| | | | | |
1 IIISVSSMDN KLSSRIIQTF CNLKYLKLDE LTLKKVCGGI LPLWKPELIS GTREFFVKFM 60
61 ASIFMWSTRD GHDNNCTFSE TCFYVLQMIT NWVLDDKLIA LGLTLLHDMQ SLLTLDKIFN 120
121 NATSNRFSTM AFISSLDILT QLSKQTKSDY AIQYLIVGPD IMNKVFSSDD PLLLSAACRY 180
181 LVATKNKLMQ YPSTNKFVRM QNQYIMDLTN YLYRNKVL
|
| Detection Method: | |
| Confidence: | 2.1 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [599-733] |
1 11 21 31 41 51
| | | | | |
1 SSKSLFGVSP DFFKQILENL YIPTADFKNA KFFTITGIPA LSYICIIILR RLETAENTKI 60
61 KFTSGIINEE TFNNFFRVHH DEIGQHGWIK GVNNIHDLRV KILMHLSNTA NPYRDIAAFL 120
121 FTYLKSLSKY SVQNS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.784 | a.1.1 | Globin-like |
| View | Download | 0.667 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.625 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.576 | a.1.1 | Globin-like |
| View | Download | 0.536 | a.24.4 | Hemerythrin |
| View | Download | 0.521 | a.22.1 | Histone-fold |
| View | Download | 0.485 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.483 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.439 | a.1.1 | Globin-like |
| View | Download | 0.438 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.412 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.395 | d.92.2 | beta-N-acetylhexosaminidase-like domain |
| View | Download | 0.391 | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.391 | a.24.3 | Cytochromes |
| View | Download | 0.378 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.365 | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.356 | c.10.2 | L domain-like |
| View | Download | 0.350 | a.74.1 | Cyclin-like |
| View | Download | 0.348 | d.95.2 | Homing endonucleases |
| View | Download | 0.341 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.334 | d.2.1 | Lysozyme-like |
| View | Download | 0.325 | a.95.1 | Influenza virus matrix protein M1 |
| View | Download | 0.325 | d.92.2 | beta-N-acetylhexosaminidase-like domain |
| View | Download | 0.321 | a.26.1 | 4-helical cytokines |
| View | Download | 0.318 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.311 | d.218.1 | Nucleotidyltransferase |
| View | Download | 0.311 | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.305 | a.26.1 | 4-helical cytokines |
| View | Download | 0.302 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.301 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.294 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.292 | a.26.1 | 4-helical cytokines |
| View | Download | 0.291 | a.1.1 | Globin-like |
| View | Download | 0.290 | a.25.1 | Ferritin-like |
| View | Download | 0.272 | c.95.1 | Thiolase-like |
| View | Download | 0.264 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.260 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.254 | a.116.1 | GTPase activation domain, GAP |
| View | Download | 0.241 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.232 | c.55.3 | Ribonuclease H-like |
| View | Download | 0.230 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.225 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.224 | a.21.1 | HMG-box |
| View | Download | 0.220 | a.26.1 | 4-helical cytokines |
| View | Download | 0.217 | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.217 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.216 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.211 | f.1.1 | Colicin |
| View | Download | 0.206 | d.163.1 | DNA breaking-rejoining enzymes |
| View | Download | 0.204 | c.78.1 | Aspartate/ornithine carbamoyltransferase |
| View | Download | 0.202 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.201 | a.118.1 | ARM repeat |
