YRC Public Data Repository - Protein Structure Prediction

Protein:	SUR4
Organism:	Saccharomyces cerevisiae
Length:	345 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUR4.

Description	E-value	Query Range	Subject Range
gi\|467698 - gi\|467698\|emb\|CAA55129.1\| SUR4 [Saccharomyces cerevisiae]	7.0E-88	[1..345]	[1..345]
SPAC1B2.03c - GNS1 /SUR4 family protein ELOH1_SCHPO - Putative elongation of fatty acids protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	3.0E-72	[27..321]	[9..300]
gi\|8050874 - gi\|8050874\|gb\|AAF71789.1\|AF268031_1 long chain fatty acid elongation enzyme [Mortierella alpina]	6.0E-65	[34..339]	[13..315]
ELOV5_RAT - Elongation of very long chain fatty acids protein 5 OS=Rattus norvegicus GN=Elovl5 PE=1 SV=1	1.0E-63	[48..344]	[7..295]
ELOVL5 - ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) ENSPTRT00000033809 - null	2.0E-63	[48..344]	[7..295]
ELOV4_MACMU - Elongation of very long chain fatty acids protein 4 OS=Macaca mulatta GN=ELOVL4 PE=3 SV=1 ELOV4_MACFA - Elongation of very long chain fatty acids protein 4 OS=Macaca fascicularis GN=ELOVL4 PE=2 SV=1	7.0E-60	[46..345]	[19..311]

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Predicted Domain #1

Region A:
Residues: [1-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTTSTVIA AVADQFQSLN SSSSCFLKVH VPSIENPFGI ELWPIFSKVF EYFSGYPAEQ  60
   61 FEFIHNKTFL ANGYHAVSII IVYYIIIFGG QAILRALNAS PLKFKLLFEI HNLFLTSISL 120
  121 VLWLLMLEQL VPMVYHNGLF WSICSKEAFA PKLVTLYYLN YLTKFVELID TVFLVLRRKK 180
  181 LLFLHTYHHG ATALLCYTQL IGRTSVEWVV ILLNLGVHVI MYWYYFLSSC GIRVWWKQWV 240
  241 TRFQIIQFLI DLVFVYFATY TFYAHKYLDG ILPNKGTCYG TQAAAAYGYL ILTSYLLLFI 300
  301 SFYIQSYKKG GKKTVKKESE VSGSVASGSS TGVKTSNTKV SSRKA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	224.60206
Match:	PF01151
Description:	GNS1/SUR4 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits