YRC Public Data Repository - Protein Structure Prediction

Protein:	ORM2
Organism:	Saccharomyces cerevisiae
Length:	216 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ORM2.

Description	E-value	Query Range	Subject Range
ORM2_YEAST - Protein ORM2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ORM2 PE=1 SV=1 gi\|151940874 - gi\|151940874\|gb\|EDN59256.1\| conserved protein [Saccharomyces cerevisiae YJM789] ORM2 - Evolutionarily conserved protein, similar to Orm1p, required for resistance to agents that induce un...	5.0E-89	[1..216]	[1..216]
SPBC119.09c - ORMDL family protein YBA9_SCHPO - Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC119.0...	2.0E-59	[43..204]	[7..168]
ORM1_SACMO - Protein ORM1 OS=Saccharomyces monacensis GN=ORM1 PE=4 SV=1 ORM1_SACMO - Protein ORM1 OS=Saccharomyces pastorianus (strain ATCC 76670 / Carlsberg bottom yeast no.2 / CBS 150...	9.0E-57	[70..216]	[1..148]
gi\|9665157, gi\|2... - gi\|9665157\|gb\|AAF97341.1\|AC023628_22 Unknown protein [Arabidopsis thaliana], pir\|\|E86142 F6F3.4 prot...	9.0E-49	[67..214]	[13..161]
gi\|1842140 - gi\|1842140\|dbj\|BAA19218.1\| unnamed protein product [Schizosaccharomyces pombe]	4.0E-48	[73..204]	[1..132]
ORMDL2 - ORM1-like 2 (S. cerevisiae) gi\|190689629, gi... - gi\|190690993\|gb\|ACE87271.1\| ORM1-like 2 (S. cerevisiae) protein [synthetic construct], gi\|190689629\|...	5.0E-48	[66..204]	[8..147]
ORML3_MOUSE - ORM1-like protein 3 OS=Mus musculus GN=Ormdl3 PE=2 SV=1	2.0E-47	[66..204]	[8..147]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDRTKNESP AFEESPLTPN VSNLKPFPSQ SNKISTPVTD HRRRRSSSVI SHVEQETFED  60
   61 ENDQQMLPNM NATWVDQRGA WLIHIVVIVL LRLFYSLFGS TPKWTWTLTN MTYIIGFYIM 120
  121 FHLVKGTPFD FNGGAYDNLT MWEQINDETL YTPTRKFLLI VPIVLFLISN QYYRNDMTLF 180
  181 LSNLAVTVLI GVVPKLGITH RLRISIPGIT GRAQIS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits