YRC Public Data Repository - Protein Structure Prediction

Protein:	RPP0
Organism:	Saccharomyces cerevisiae
Length:	312 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPP0.

Description	E-value	Query Range	Subject Range
RLA0_RANSY - 60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1	0.0	[5..312]	[7..315]
gi\|187609305 - gi\|187609305\|pdb\|2ZKR\|GG Chain g, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... RPLP0 - ribosomal protein, large, P0 gi\|208967340, gi... - gi\|208967340\|dbj\|BAG73684.1\| ribosomal protein, large, P0 [synthetic construct], gi\|123996641\|gb\|ABM... gi\|55639049 - gi\|55639049\|ref\|XP_509423.1\| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) [Pan trogl...	0.0	[5..312]	[7..317]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[5..312]	[7..316]
RLA0_MOUSE - 60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3	0.0	[5..312]	[7..317]
RLA0_DANRE - 60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1	0.0	[5..312]	[7..319]
RLA0_CHICK - 60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1	0.0	[5..312]	[7..316]
RLA0_ICTPU - 60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1	0.0	[5..273]	[7..275]
RLA0_BOVIN - (Q95140) 60S acidic ribosomal protein P0 (L10E) (Fragment)	0.0	[8..312]	[1..309]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGIREKKAE YFAKLREYLE EYKSLFVVGV DNVSSQQMHE VRKELRGRAV VLMGKNTMVR  60
   61 RAIRGFLSDL PDFEKLLPFV KGNVGFVFTN EPLTEIKNVI VSNRVAAPAR AGAVAPEDIW 120
  121 VRAVNTGMEP GKTSFFQALG VPTKIARGTI EIVSDVKVVD AGNKVGQSEA SLLNLLNISP 180
  181 FTFGLTVVQV YDNGQVFPSS ILDITDEELV SHFVSAVSTI ASISLAIGYP TLPSVGHTLI 240
  241 NNYKDLLAVA IAASYHYPEI EDLVDRIENP EKYAAAAPAA TSAASGDAAP AEEAAAEEEE 300
  301 ESDDDMGFGL FD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	336.28043
Match:	1jj2G_
Description:	Ribosomal protein L10
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits