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View Structure Prediction Details

Protein: OPI9
Organism: Saccharomyces cerevisiae
Length: 285 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OPI9.

Description E-value Query
Range
Subject
Range
gi|393196 - gi|393196|gb|AAA18801.1| S-antigen [Plasmodium falciparum]
0.006 [69..134] [98..164]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFESRPIVG VGGGGGACGG LLTCVGRDAE GKGGADTLGR EILELFLWWL LCAGLTEGIC  60
   61 GLFCGTFGAE APDNGSGGAG DDGTMGIGGA AEDGISGIGG AEDEGILGTA GAGDNGALGM 120
  121 GGAATDGTAP GIGGALADGE GLVLALLLIC FNFGIPPAKI SPNCGAPIPG IGGADIEGPL 180
  181 LLTVPELP

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.66
Match: 1la5A
Description: No description for 1la5A was found.

Predicted Domain #2
Region A:
Residues: [189-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EADETTPPPT IGALLSLVSA FFSFIPFLMS PNRASRPCIT DFAGLGALPP NAGGGGGGGG  60
   61 AGAPAISTIR YIYGRLLQQT VVRFLVVCFV SYQKLSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.669 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.490 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.407 a.24.7 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View Download 0.384 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.377 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.350 a.66.1 Transducin (alpha subunit), insertion domain
View Download 0.347 a.2.5 Prefoldin
View Download 0.338 f.14.1 Voltage-gated potassium channels
View Download 0.310 g.53.1 TAZ domain
View Download 0.301 b.40.4 Nucleic acid-binding proteins
View Download 0.299 a.4.5 "Winged helix" DNA-binding domain
View Download 0.296 a.4.1 Homeodomain-like
View Download 0.290 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.285 a.156.1 S13-like H2TH domain
View Download 0.267 a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.246 a.2.7 tRNA-binding arm
View Download 0.246 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.242 d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.238 a.48.1 N-terminal domain of cbl (N-cbl)
View Download 0.236 a.24.9 alpha-catenin/vinculin
View Download 0.230 a.47.2 t-snare proteins
View Download 0.227 a.16.1 S15/NS1 RNA-binding domain
View Download 0.226 a.29.5 alpha-ketoacid dehydrogenase kinase, N-terminal domain
View Download 0.223 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.212 a.24.2 Aspartate receptor, ligand-binding domain
View Download 0.211 d.49.1 Signal recognition particle alu RNA binding heterodimer, SRP9/14
View Download 0.209 a.1.1 Globin-like
View Download 0.208 a.11.1 Acyl-CoA binding protein
View Download 0.207 a.73.1 Retrovirus capsid protein, N-terminal core domain
View Download 0.206 a.77.1 DEATH domain
View Download 0.204 a.62.1 Hepatitis B viral capsid (hbcag)
View Download 0.204 a.46.1 Methionine synthase domain
View Download 0.202 a.7.1 Spectrin repeat
View Download 0.201 d.56.1 GroEL-intermediate domain like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle