YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS25B
Organism:	Saccharomyces cerevisiae
Length:	108 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS25B.

Description	E-value	Query Range	Subject Range
gi\|109075654, gi... - gi\|109108908\|ref\|XP_001100935.1\| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta], g... ENSOCUP000000148... - pep:novel scaffold:oryCun2:GL018823:491762:493564:-1 gene:ENSOCUG00000017256 transcript:ENSOCUT00000... RS25_MOUSE - 40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=1 SV=1 RS25_BOVIN - 40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1 gi\|217038883 - gi\|217038883\|gb\|ACJ76798.1\| ribosomal protein S25 [Ailuropoda melanoleuca] gi\|123992117, gi... - gi\|60655861\|gb\|AAX32494.1\| ribosomal protein S25 [synthetic construct], gi\|123999452\|gb\|ABM87284.1\| ... gi\|149716588 - gi\|149716588\|ref\|XP_001503113.1\| PREDICTED: similar to mCG10725 [Equus caballus] ENSCJAT000000442... - null, null RS25_SHEEP - 40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1 gi\|197129813, gi... - gi\|224083044\|ref\|XP_002188281.1\| PREDICTED: putative 40S ribosomal protein S25 variant 1 [Taeniopygi... RPS25 - ribosomal protein S25 gi\|55637069 - gi\|55637069\|ref\|XP_508801.1\| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes] RS25_RAT - 40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1 gi\|90075214 - gi\|90075214\|dbj\|BAE87287.1\| unnamed protein product [Macaca fascicularis] gi\|542174986\|ref... - PREDICTED: 40S ribosomal protein S25 [Zonotrichia albicollis]	2.0E-28	[1..107]	[1..115]
gi\|15227183, gi\|... - gi\|4544393\|gb\|AAD22303.1\| 40S ribosomal protein S25 [Arabidopsis thaliana], pir\|\|D84539 40S ribosoma...	3.0E-27	[22..105]	[39..122]
RS25_SOLLC - 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1	1.0E-24	[2..105]	[3..106]
gi\|157870648 - gi\|157870648\|ref\|XP_001683874.1\| ribosomal protein S25 [Leishmania major] gi\|146088810, gi... - gi\|146098641\|ref\|XP_001468433.1\| ribosomal protein S25 [Leishmania infantum], gi\|146088810\|ref\|XP_00... gi\|68126941 - gi\|68126941\|emb\|CAJ05186.1\| ribosomal protein S25 [Leishmania major] RS25_LEIIN - 40S ribosomal protein S25 OS=Leishmania infantum GN=RPS25 PE=2 SV=1	2.0E-24	[1..103]	[1..103]
RS25_SPOFR - 40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3 SV=1	4.0E-24	[1..108]	[1..115]
gi\|4409 - gi\|4409\|emb\|CAA26797.1\| ribosomal protein S31 precursor [Saccharomyces pastorianus] Sbay_7.307, Sbay... - probable YGR027C RPS25A (72736-73062), null ORFP:8300 - YGR027C, Contig c9 3761-4087 RPS25A - Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Bp and has similari... gi\|207345216 - gi\|207345216\|gb\|EDZ72107.1\| YGR027Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190406947 - gi\|190406947\|gb\|EDV10214.1\| ribosomal protein S25A [Saccharomyces cerevisiae RM11-1a] RS25A_YEAST - 40S ribosomal protein S25-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS25A PE=1 ... gi\|151943310 - gi\|151943310\|gb\|EDN61623.1\| ribosomal protein S25A [Saccharomyces cerevisiae YJM789]	7.0E-24	[1..108]	[1..108]
rps-25 - ribosomal protein status:Confirmed UniProt:P52821 protein_id:AAK39246.1	1.0E-23	[1..106]	[1..110]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKQQLSKA AKAAAALAGG KKSKKKWSKK SMKDRAQHAV ILDQEKYDRI LKEVPTYRYV  60
   61 SVSVLVDRLK IGGSLARIAL RHLEKEGIIK PISKHSKQAI YTRAAASE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	64.60206
Match:	PF03297
Description:	S25 ribosomal protein

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits