YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL38
Organism:	Saccharomyces cerevisiae
Length:	78 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL38.

Description	E-value	Query Range	Subject Range
gi\|76646012 - gi\|76646012\|ref\|XP_872162.1\| PREDICTED: similar to 60S ribosomal protein L38, partial [Bos taurus]	132.0	[0..1]	[78..410]
gi\|50808293 - gi\|50808293\|ref\|XP_428957.1\| PREDICTED: similar to G protein-coupled receptor 142, partial [Gallus g...	118.0	[0..2]	[71..42]
gi\|115313002 - gi\|115313002\|gb\|AAI24070.1\| Zgc:152655 protein [Danio rerio]	108.0	[0..14]	[78..186]
gi\|109117614 - gi\|109117614\|ref\|XP_001089804.1\| PREDICTED: similar to 60S ribosomal protein L38 [Macaca mulatta]	101.0	[0..2]	[78..129]
gi\|50931949, gi\|... - gi\|50931949\|ref\|XP_475502.1\| putative 60S ribosomal protein L38 [Oryza sativa (japonica cultivar-gro...	100.0	[0..1]	[78..1]
RL38_ARATH - 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1	99.0	[0..1]	[78..1]
gi\|77745467 - gi\|77745467\|gb\|ABB02632.1\| ribosomal protein L38-like [Solanum tuberosum] RL38_SOLLC - 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1	99.0	[0..1]	[78..1]
rpl3802 - 60S ribosomal protein L38 RL38B_SCHPO - 60S ribosomal protein L38-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3802 PE=3 S...	97.0	[0..1]	[78..1]
gi\|111307831 - gi\|111307831\|gb\|AAI21347.1\| LOC548667 protein [Xenopus tropicalis]	96.0	[0..17]	[78..366]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREITDIKQ FLELTRRADV KTATVKINKK LNKAGKPFRQ TKFKVRGSSS LYTLVINDAG  60
   61 KAKKLIQSLP PTLKVNRL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.60206
Match:	PF01781.9
Description:	No description for PF01781.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.858	N/A	N/A	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.658	N/A	N/A	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.657	N/A	N/A	c.47.1	Thioredoxin-like
View	Download	0.646	N/A	N/A	d.50.1	dsRNA-binding domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits