| Protein: | PEX30 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 523 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX30.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..523] | [1..523] |
|
|
0.0 | [37..466] | [4..417] |
|
|
0.002 | [291..409] | [63..162] |
|
|
0.002 | [291..409] | [63..162] |
|
|
0.002 | [146..436] | [212..513] |
|
|
0.003 | [291..409] | [781..880] |
|
Region A: Residues: [1-282] |
1 11 21 31 41 51
| | | | | |
1 MSGNTTNVHE TRAKFAETLQ PRIGGNTTKV IRAALEKNEA ESGVSEDNDN GSLEKVNVAT 60
61 SPLLTSTPPT ISKALVKLYP YLILIDEFLN VVTWTGKNIW SSVLMLCLFI TTVEYFETLV 120
121 KYFGHLAIIA ILWGYSLLDN YIEGTLSSSP TLEDIALLMN RVSLKSDILL SPMVNLGTQD 180
181 IQRLLYTTVI LSPIYVMITW LLLPPRSLML MVGMFLLTYH SPWSKVARRL LWKFKIVRLL 240
241 VFYVTGLDLG GINKDQGIFA TVQKQVKKLA STENSNGVLS DS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [283-436] |
1 11 21 31 41 51
| | | | | |
1 KPIRFTYVLY ENQRRWLGIG WKPSMLSYER TPWTDEFLNE APSPENFHLP EETNTMVWRW 60
61 VDKTWRLDMT NDGAIQVPNS KARTSADPSP DEGFIYYDNT WKKPSKEDSF SKYTRRRRWV 120
121 RTAELVKTSD FDESVINSNR NSAIEQKVEE NSTN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [437-523] |
1 11 21 31 41 51
| | | | | |
1 GLTAEQELGS NKQEKDNAKK VGEPTTEETK EFAEASNINE GEFERISSTD EEVLKSRARD 60
61 RLAKVLDDTE EKEQSNPTIG RDSKKAV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.409 | a.39.1 | EF-hand |
| View | Download | 0.568 | a.77.1 | DEATH domain |
| View | Download | 0.333 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.335 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.284 | a.5.2 | UBA-like |
| View | Download | 0.263 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.255 | a.77.1 | DEATH domain |
| View | Download | 0.248 | a.77.1 | DEATH domain |
| View | Download | 0.244 | d.120.1 | Cytochrome b5 |
| View | Download | 0.243 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.241 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.234 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.222 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.221 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.209 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.208 | a.61.1 | Retroviral matrix proteins |
|
Region A: Residues: [421-523] |
1 11 21 31 41 51
| | | | | |
1 NRNSAIEQKV EENSTNGLTA EQELGSNKQE KDNAKKVGEP TTEETKEFAE ASNINEGEFE 60
61 RISSTDEEVL KSRARDRLAK VLDDTEEKEQ SNPTIGRDSK KAV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.568 | a.77.1 | DEATH domain |
| View | Download | 0.409 | a.39.1 | EF-hand |
| View | Download | 0.336 | a.39.1 | EF-hand |
| View | Download | 0.335 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.333 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
