YRC Public Data Repository - Protein Structure Prediction

Protein:	SFH1
Organism:	Saccharomyces cerevisiae
Length:	426 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFH1.

Description	E-value	Query Range	Subject Range
SFH1_YEAST - Chromatin structure-remodeling complex subunit SFH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 ... gi\|207342838 - gi\|207342838\|gb\|EDZ70479.1\| YLR321Cp-like protein [Saccharomyces cerevisiae AWRI1631] SFH1 - Component of the RSC chromatin remodeling complex; essential gene required for cell cycle progressio...	0.0	[1..426]	[1..426]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[180..424]	[159..395]
gi\|10436280 - gi\|10436280\|dbj\|BAB14784.1\| unnamed protein product [Homo sapiens]	3.0E-92	[187..407]	[179..389]
gi\|114685376 - gi\|114685376\|ref\|XP_001169712.1\| PREDICTED: SWI/SNF related, matrix associated, actin dependent regu... gi\|109452096, gi... - gi\|208965588\|dbj\|BAG72808.1\| SWI/SNF related, matrix associated, actin dependent regulator of chroma... gi\|109094830 - gi\|109094830\|ref\|XP_001084732.1\| PREDICTED: similar to SWI/SNF related, matrix associated, actin dep... SMARCB1 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 SNF5_MOUSE - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Mus... gi\|73995701 - gi\|73995701\|ref\|XP_848814.1\| PREDICTED: similar to SWI/SNF related, matrix associated, actin depende... HGNC:11103\|MIM:6... - related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 gi\|149043719 - gi\|149043719\|gb\|EDL97170.1\| SWI/SNF related, matrix associated, actin dependent regulator of chromat... ENSCJAT00000021013 - null gi\|194043360 - gi\|194043360\|ref\|XP_001929472.1\| PREDICTED: SWI/SNF related, matrix associated, actin dependent regu... CCDS13817.1_1 - null	2.0E-91	[187..407]	[170..380]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHQNQLIPQ AYISNFHNRL TNEDDGIPIF TMAQQTRQHK RAKVVNYAEY DNDLFDEFNM  60
   61 NGSNFNNADT HYKDNAVSHE NTPALTNGVT MDGSEYNVLE NMNGADSIIS NNKYDAGSNM 120
  121 VVESLSGLNS NNNASNG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSNKAQAQDI GNAVLPDLQD QHHNPFNILR YPKIRDTFIN GKVVSPYRLN TDQETKANAN  60
   61 SGEAIMIPIT LDIEHMGHTI KDQFLWNYND DSISPEEFAS IYCKDLDMTS ATLQTQIANI 120
  121 IKEQLKDLEN IAATEIMSDL HVIINLTCNL QDRFFEDNFQ WNLNDKSLTP ERFATSIVQD 180
  181 LGLTREFIPL ISQSLHETIL KIKKDWVDGH LIQDHVPNDA AFGYLSGIRL DIDELGSNWC 240
  241 PRVEILTKEE IQKREIEKER NLRRLKRETD RLSRRGRRRL DDLETTMRM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits