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View Structure Prediction Details

Protein: MMS22
Organism: Saccharomyces cerevisiae
Length: 1454 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MMS22.

Description E-value Query
Range
Subject
Range
MMS22 - Protein that acts with Mms1p in a repair pathway that may be involved in resolving replication inter...
MMS22_YEAST - E3 ubiquitin-protein ligase substrate receptor MMS22 OS=Saccharomyces cerevisiae (strain ATCC 204508...
0.0 [1..1454] [1..1454]

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Predicted Domain #1
Region A:
Residues: [1-1454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVDEPNPIV ISDSEATDEE ISIIYEPEFN ENYLWAEENV QEASRSQKIV TERLSLDSTA  60
   61 GESCTPSVVT DTQVTTGLRW SLRKRKAIQK MPYSLERIKH RQLLEGYDIS SFDSISNQLT 120
  121 LPKNASTVIH SNDILLTKRT GKPLDEQKDV TIDSIKPENS SVQSQRYDSD EEIPKKRHRT 180
  181 FKDLDQDIVF QSGDSTEDEQ DLASTNLQNT QNDEVIFRGR VLNVRTGYRG VLPRVAWEKS 240
  241 LQKQQSSKVT KRKTQLLNHK GVAKRKMNRS AHIEDEEQNL LNDLIAPDDE LDIEENAPPD 300
  301 IYLGNLPEDR EANEKELKEL QEYYESKYSE DAQSAGTSGF NLNEEYRNEP VYELEYDGPG 360
  361 SCISHVSYKD QPIIYLNSRH SDSGFSEQYN ISAEDNQSVI SLDAAEEHND GIIDKMLVKP 420
  421 KRIKATNDAN FLNTKSKRVR RYKYKYRNSC LAPSTKAIKV GKRSAHKSHL AANNPVSFVS 480
  481 KKNHVIDDYF FEELESQSLE QDDSSSLKPQ KKRRKKKAPI YSSFSADLES RRKPVFNTVV 540
  541 EVPTNRYAFT KPNVRNRDSI NHDMEFEEED SNQELGPIMV VLDSILLKKP FEPPNFFKIQ 600
  601 LSDKSFLLSK LNPADIATSL QKIFRVIIDK GITDTELVHF NESLIAFLVH LDMPELFDLI 660
  661 GEFHREFRSK VNSLRKKAKP IHFFQIAACQ LMFLEISRYN KISAAAKFDM DVKLLDHIVS 720
  721 FFKLLSVCYD SVMKNPMQYL YTSYYILSAV VDVIHKKEAL WDLFQKHPFS PHISLLLVNI 780
  781 FPTKVCRWQV LRLDSEFQPL SSAFRFINYC IETCNWNVTN SLILSLDRIF KRRRFSDFEE 840
  841 ESDLSQNNKI IYPPTNQLTS RLMFNRYLHL LTLCELSSSD TQRVIPMGDI SMNDSLSVLK 900
  901 NRLNLLIVLA TRFDLNLEKR FQELTRPLYS KEYLNLHTQN TVRTITTLIM QASLSFLEIS 960
  961 RIKNHPFSGK FIASLFDKLV LQQPSISGVT ENFLKEFTNL VSKMKRKSVS MLKFLYPSLV1020
 1021 AMSQENIFES SFFLLLQVYL KSLDVLGPTW VQNYLFQFIK SKAQENERWI ECYCQIGKFL1080
 1081 VDSGIFTWWT FFTYNGLDAA LHFQLAFHSL IIDFCDTDSF ELLKKPLYSI ASDLLLISKD1140
 1141 DAFYHFLSNL LKRAHIIVAD LKPVSDENEL LRLAYIFSKA LKKNAYQDLL AVFLSLAKKH1200
 1201 YDEGDISRNF LAKYLEFLNK NCLTELRNNQ LFISLRRELG ISSDEDEKCA FWDSFNEAGD1260
 1261 ILSKAAFVET GIVQACCTGN EIDGYLDNLS TLFTSTMLES PFAFFSDLVI AHIFENRPFF1320
 1321 DVNIKNFLLS HFIDLFNKVL KMKFEQVSPD EFAELCKVYR ALCIECATDD TFNSNSDLIA1380
 1381 AKDAFLVSVL RIADGFWEHD KLLQLRMLDS NMNIPNQIPH TTLQSSLSAI VIKIIESNIG1440
 1441 KIEASEPFKT FKNT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [296-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAPPDIYLGN LPEDREANEK ELKELQEYYE SKYSEDAQSA GTSGFNLNEE YRNEPVYELE  60
   61 YDGPGSCISH VSYKDQPIIY LNSRHSDSGF SEQYNISAED NQSVISLDAA EEHNDGIIDK 120
  121 MLVKPKRIKA TNDANFLNTK SKRVRRYKYK YRNSCLAPST KAIKVGKRSA HKSHLAANNP 180
  181 VSFVSKKNHV IDDYFFEELE SQSLEQDDSS SLKPQKKRRK KKA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [519-700]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIYSSFSADL ESRRKPVFNT VVEVPTNRYA FTKPNVRNRD SINHDMEFEE EDSNQELGPI  60
   61 MVVLDSILLK KPFEPPNFFK IQLSDKSFLL SKLNPADIAT SLQKIFRVII DKGITDTELV 120
  121 HFNESLIAFL VHLDMPELFD LIGEFHREFR SKVNSLRKKA KPIHFFQIAA CQLMFLEISR 180
  181 YN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [701-847]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KISAAAKFDM DVKLLDHIVS FFKLLSVCYD SVMKNPMQYL YTSYYILSAV VDVIHKKEAL  60
   61 WDLFQKHPFS PHISLLLVNI FPTKVCRWQV LRLDSEFQPL SSAFRFINYC IETCNWNVTN 120
  121 SLILSLDRIF KRRRFSDFEE ESDLSQN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [848-938]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKIIYPPTNQ LTSRLMFNRY LHLLTLCELS SSDTQRVIPM GDISMNDSLS VLKNRLNLLI  60
   61 VLATRFDLNL EKRFQELTRP LYSKEYLNLH T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [939-1165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNTVRTITTL IMQASLSFLE ISRIKNHPFS GKFIASLFDK LVLQQPSISG VTENFLKEFT  60
   61 NLVSKMKRKS VSMLKFLYPS LVAMSQENIF ESSFFLLLQV YLKSLDVLGP TWVQNYLFQF 120
  121 IKSKAQENER WIECYCQIGK FLVDSGIFTW WTFFTYNGLD AALHFQLAFH SLIIDFCDTD 180
  181 SFELLKKPLY SIASDLLLIS KDDAFYHFLS NLLKRAHIIV ADLKPVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1166-1454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DENELLRLAY IFSKALKKNA YQDLLAVFLS LAKKHYDEGD ISRNFLAKYL EFLNKNCLTE  60
   61 LRNNQLFISL RRELGISSDE DEKCAFWDSF NEAGDILSKA AFVETGIVQA CCTGNEIDGY 120
  121 LDNLSTLFTS TMLESPFAFF SDLVIAHIFE NRPFFDVNIK NFLLSHFIDL FNKVLKMKFE 180
  181 QVSPDEFAEL CKVYRALCIE CATDDTFNSN SDLIAAKDAF LVSVLRIADG FWEHDKLLQL 240
  241 RMLDSNMNIP NQIPHTTLQS SLSAIVIKII ESNIGKIEAS EPFKTFKNT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle