YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: IMH1
Organism: Saccharomyces cerevisiae
Length: 911 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IMH1.

Description E-value Query
Range
Subject
Range
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1
0.0 [5..911] [854..1749]
MYH2_BOVIN - Myosin-2 OS=Bos taurus GN=MYH2 PE=2 SV=1
0.0 [5..911] [857..1752]
MYSS_CYPCA - Myosin heavy chain, fast skeletal muscle OS=Cyprinus carpio PE=2 SV=2
0.0 [5..911] [853..1748]
gi|9800488, gi|1... - gi|9800488|gb|AAF99315.1|AF272034_1 fast myosin heavy chain isoform 3 [Gallus gallus], gi|165973976|...
0.0 [5..911] [857..1752]
gi|12053672 - gi|12053672|emb|CAC20413.1| beta-myosin heavy chain [Homo sapiens]
0.0 [3..911] [847..1747]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [5..911] [854..1749]

Back

Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKQLSQIGK NLTDELAKGL ADDMSPTPSE QQIEDDKSGL PKEIQAKLRK FEKYEQKYPL  60
   61 LLSAYKNEKL KSEKLEAVEK ILAENTPISN IDDAVDTLPA FFQDLNNKNN LLNDEIKRLT 120
  121 KQNSEIPESA SSETLKDKEE EFLKKEQNYK NDIDDLKKKM EALNIELDTV QKEKNDTVSG 180
  181 LREKIVALEN ILKEEREAKK QKEEVSISEL KEELAIKNHS LEDSRMKITE LEQNLSSKST 240
  241 IMEEKSSELA ELNITLKEKE RKLSELEKKM KELPKAISHQ NVGNNNRRKK NRNKGKKNKG 300
  301 GITTGDISEE ETVDNSINTE EYDKLKENLQ ELQEKY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.9897
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [337-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDCEDWKQKY EDIEAELKDA KELENSQLEK SAKELETLNT ELIDTKKSLK EKNSELEEVR  60
   61 DMLRTVGNEL VDAKDEIKES SSKQNEEVKT VKLELDDLRH KNATMIEAYE AKNTELRSKI 120
  121 ELLSKKVEHL KNLCTEKEKE QTTSQNKVAK LNEEISQLTY EKSNITKELT SLRTSYKQKE 180
  181 KTVSYLEEQV KQFSEQKDVA EKSTEQLRKD HAKISN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [553-636]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLDLLKKENE TLHNDIAKNS NSYEEYLKEN GKLSERLNIL QEKYNTLQNV KSNSNEHIDS  60
   61 IKRQCEELNV KLKESTKKIL SLED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 2tmaA_
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [637-719]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELNEYANIVQ DKTREANTLR RLVSDSQTDD SSKQKELENK LAYLTDEKNK LEAELDLQTS  60
   61 RKATELQEWK HTVTELKSEI HAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 2tmaA_
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [720-781]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLREEGLKSE VDALKHVNND IKRKTQATSD DSDQLEQITS NLKLSLSKAD EKNFELQSAN  60
   61 EK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 2tmaA_
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [782-911]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLNLNNELNK KFDRLLKNYR SLSSQLNALK ERQYSDKSGR VSRSGSIGTL ANANIDSSPA  60
   61 NNSNPTKLEK IRSSSSLELD SEKNEKIAYI KNVLLGFLEH KEQRNQLLPV ISMLLQLDST 120
  121 DEKRLVMSLK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 2tmaA_
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle