YRC Public Data Repository - Protein Structure Prediction

Protein:	CDA1
Organism:	Saccharomyces cerevisiae
Length:	301 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDA1.

Description	E-value	Query Range	Subject Range
CDA1_YEAST - Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 CDA1 - Chitin deacetylase, together with Cda2p involved in the biosynthesis ascospore wall component, chito...	3.0E-90	[1..301]	[1..301]
gi\|19748536, gi\|... - gi\|19748536\|gb\|AAL97977.1\| putative deacetylase [Streptococcus pyogenes MGAS8232], gi\|19746342\|ref\|N...	2.0E-61	[23..292]	[151..422]
gi\|13622479, gi\|... - gi\|15675302\|ref\|NP_269476.1\| putative deacetylase [Streptococcus pyogenes M1 GAS], gi\|13622479\|gb\|AA...	6.0E-61	[23..292]	[151..422]
gi\|1531619 - gi\|1531619\|gb\|AAB16896.1\| NodB [Rhizobium sp. N33]	7.0E-57	[90..287]	[3..211]
gi\|595264 - gi\|595264\|gb\|AAA63601.1\| chitooligosaccharide deacetylase NODB_BRAEL - Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1	5.0E-56	[88..287]	[2..212]
NODB_RHIME - Chitooligosaccharide deacetylase OS=Rhizobium meliloti GN=nodB PE=3 SV=3 NODB_RHIME - Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3	5.0E-56	[93..287]	[6..210]
gi\|68271044 - gi\|68271044\|gb\|AAY89043.1\| NodB [Sinorhizobium fredii] NODB_RHISN - Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2	8.0E-56	[101..287]	[11..208]
gi\|46216 - gi\|46216\|emb\|CAA68620.1\| unnamed protein product [Rhizobium leguminosarum]	9.0E-56	[93..287]	[6..212]
gi\|16799513 - gi\|16799513\|ref\|NP_469781.1\| hypothetical protein lin0436 [Listeria innocua Clip11262] gi\|25515678, gi\|... - pir\|\|AE1487 endo-1,4-beta-xylanase homolog lin0436 [imported] - Listeria innocua (strain Clip11262),...	1.0E-55	[38..293]	[209..448]

Back

Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFNTIQSV LFAAFFLKQG NCLASNGSTA LMGEVDMQTP FPEWLTEFTN LTQWPGIDPP  60
   61 YIPLDYINLT EVPELDRYYP GQCPKISREQ CSFDCYNCID VDDVTS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
chitin deacetylase activity	10.7874217761055	bayes_pls_golite062009
deacetylase activity	5.05898534854944	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	2.02667023181984	bayes_pls_golite062009
binding	1.08589216404246	bayes_pls_golite062009
hydrolase activity	1.07980851332544	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	0.808382884321605	bayes_pls_golite062009
protein binding	0.394432087623352	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [107-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CFKLSQTFDD GPAPATEALL KKLRQRTTFF VLGINTVNYP DIYEHILERG HLIGTHTWSH  60
   61 EFLPSLSNEE IVAQIEWSIW AMNATGKHFP KYFRPPYGAI DNRVRAIVKQ FGLTVVLWDL 120
  121 DTFDWKLITN DDFRTEEEIL MDINTWKGKR KGLILEHDGA RRTVEVAIKI NELIGSDQLT 180
  181 IAECIGDTDY IERYD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.721246
Match:	PF01522
Description:	Polysaccharide deacetylase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: