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View Structure Prediction Details

Protein: CDA1
Organism: Saccharomyces cerevisiae
Length: 301 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDA1.

Description E-value Query
Range
Subject
Range
CDA1_YEAST - Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1
CDA1 - Chitin deacetylase, together with Cda2p involved in the biosynthesis ascospore wall component, chito...
3.0E-90 [1..301] [1..301]
gi|19748536, gi|... - gi|19748536|gb|AAL97977.1| putative deacetylase [Streptococcus pyogenes MGAS8232], gi|19746342|ref|N...
2.0E-61 [23..292] [151..422]
gi|13622479, gi|... - gi|15675302|ref|NP_269476.1| putative deacetylase [Streptococcus pyogenes M1 GAS], gi|13622479|gb|AA...
6.0E-61 [23..292] [151..422]
gi|1531619 - gi|1531619|gb|AAB16896.1| NodB [Rhizobium sp. N33]
7.0E-57 [90..287] [3..211]
gi|595264 - gi|595264|gb|AAA63601.1| chitooligosaccharide deacetylase
NODB_BRAEL - Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1
5.0E-56 [88..287] [2..212]
NODB_RHIME - Chitooligosaccharide deacetylase OS=Rhizobium meliloti GN=nodB PE=3 SV=3
NODB_RHIME - Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3
5.0E-56 [93..287] [6..210]
gi|68271044 - gi|68271044|gb|AAY89043.1| NodB [Sinorhizobium fredii]
NODB_RHISN - Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2
8.0E-56 [101..287] [11..208]
gi|46216 - gi|46216|emb|CAA68620.1| unnamed protein product [Rhizobium leguminosarum]
9.0E-56 [93..287] [6..212]
gi|16799513 - gi|16799513|ref|NP_469781.1| hypothetical protein lin0436 [Listeria innocua Clip11262]
gi|25515678, gi|... - pir||AE1487 endo-1,4-beta-xylanase homolog lin0436 [imported] - Listeria innocua (strain Clip11262),...
1.0E-55 [38..293] [209..448]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFNTIQSV LFAAFFLKQG NCLASNGSTA LMGEVDMQTP FPEWLTEFTN LTQWPGIDPP  60
   61 YIPLDYINLT EVPELDRYYP GQCPKISREQ CSFDCYNCID VDDVTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
chitin deacetylase activity 10.7874217761055 bayes_pls_golite062009
deacetylase activity 5.05898534854944 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 2.02667023181984 bayes_pls_golite062009
binding 1.08589216404246 bayes_pls_golite062009
hydrolase activity 1.07980851332544 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 0.808382884321605 bayes_pls_golite062009
protein binding 0.394432087623352 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [107-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CFKLSQTFDD GPAPATEALL KKLRQRTTFF VLGINTVNYP DIYEHILERG HLIGTHTWSH  60
   61 EFLPSLSNEE IVAQIEWSIW AMNATGKHFP KYFRPPYGAI DNRVRAIVKQ FGLTVVLWDL 120
  121 DTFDWKLITN DDFRTEEEIL MDINTWKGKR KGLILEHDGA RRTVEVAIKI NELIGSDQLT 180
  181 IAECIGDTDY IERYD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 60.721246
Match: PF01522
Description: Polysaccharide deacetylase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle