YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR283W
Organism:	Saccharomyces cerevisiae
Length:	314 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR283W.

Description	E-value	Query Range	Subject Range
YL283_YEAST - Uncharacterized protein YLR283W, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28... YLR283W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mi...	8.0E-98	[1..314]	[1..314]
gi\|14423522, gi\|... - gi\|20148347\|gb\|AAM10064.1\| putative protein [Arabidopsis thaliana], gi\|18409266\|ref\|NP_566943.1\| unk...	8.0E-73	[13..277]	[35..293]
YBC7_SCHPO - Uncharacterized protein C27B12.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi071 PE... SPBC27B12.07 - conserved fungal protein	2.0E-67	[38..284]	[13..263]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-63	[26..277]	[1..258]
gi\|2257561 - gi\|2257561\|dbj\|BAA21453.1\| pi071 [Schizosaccharomyces pombe]	4.0E-59	[38..264]	[13..237]
gi\|12844128, gi\|... - gi\|21313508\|ref\|NP_079791.1\| coiled-coil domain containing 90B [Mus musculus], gi\|12844128\|dbj\|BAB26...	7.0E-54	[64..274]	[17..248]
CCDC90A - coiled-coil domain containing 90A	1.0E-53	[93..274]	[153..353]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRLIRTLPL RCFKTRIRRQ GSLLCLRCFS SYSKPLLQKS MSLKNIQLSD LSSSPLSKNK  60
   61 EKQEKPEKEN EGKHSIGLLD RFSEDFITQG NGLKPTTSQN QLDTIKFYQM LRERGNFSDE 120
  121 QCKIIIALLL QLLNDQFYSC YNDLFLRDME LNKQSHLFSS LETELKFAIQ NSRDTQLNEH 180
  181 HLQLLKLKRE LNSIHDELNE IIIDLLQKDA KLEFNNQKLE NTLLYRQLNL KLNDCSNKIQ 240
  241 TKILGDIRSH IENLRWQTTR SGLLVILVLV CSIMIGVSAS KKERPGLQEP EEPEILAPKE 300
  301 DIDTTFPQDQ HDID

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits