| Protein: | YCS4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1176 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCS4.
| Description | E-value | Query Range |
Subject Range |
|
|
1510.0 | [0..51] | [1167..59] |
|
|
1509.0 | [0..50] | [1175..58] |
|
|
1506.0 | [0..51] | [1167..59] |
|
|
1479.0 | [0..50] | [1167..58] |
|
|
1466.0 | [0..50] | [1167..70] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MSGFSLSEYL TKFQTTDRES YPRLQDPSRE LNVIIDQLAV SPEQIDASPD SLEALIDLCH 60
61 DFPHLTPKLQ TQLSYLISSS LSNLSKDIKA NLSSNVNFTE IGGLIPQWKR HLEEYGYLIQ 120
121 VLLTFLQDE
|
| Detection Method: |  |
| Confidence: | 12.5 |
| Match: | |
| Description: | No description for 1ejlI was found. |
|
Region A: Residues: [130-191] |
1 11 21 31 41 51
| | | | | |
1 LHKVSSQSTN LNRSAKNSKN DSANVELFKR DCNQMENLLE SITKLLEINL SKIFQTTPEK 60
61 DL
|
| Detection Method: | |
| Confidence: | 12.5 |
| Match: | |
| Description: | No description for 1ejlI was found. |
|
Region A: Residues: [192-253] |
1 11 21 31 41 51
| | | | | |
1 FIGLFTRPLF VLLEIEPVTK VSSLKMFIQR ILAMCVKNHG QSSSIQSSLM TNLTYFLHLS 60
61 VF
|
| Detection Method: | |
| Confidence: | 12.5 |
| Match: | |
| Description: | No description for 1ejlI was found. |
|
Region A: Residues: [254-399] |
1 11 21 31 41 51
| | | | | |
1 NAELLKLLND EYNYPQLTED ILKEISTRVF NAKDTTGPKA ISNFLIKLSE LSPGIMLRQM 60
61 NLVITLLNNS SITLRCSVVE ACGNIVAELA QDPQTMEHYK QQIAVLIELL EERFQDSNPY 120
121 VRTKAIQGCS KICDLSSKFN KSKAKF
|
| Detection Method: | |
| Confidence: | 14.05 |
| Match: | |
| Description: | No description for 1jpwA was found. |
|
Region A: Residues: [400-526] |
1 11 21 31 41 51
| | | | | |
1 TSLAVRSLQD RSSLVRRNSV KLLSKLLLKH PFKAIHGSQL RLSEWEEYLK GSESQLNSTL 60
61 KKVESQETLN DTIERSLIEE EVEQDEGQCR TELEGSFNKS AELSRIENEV ENINATNTSV 120
121 LMKLKLM
|
| Detection Method: | |
| Confidence: | 14.05 |
| Match: | |
| Description: | No description for 1jpwA was found. |
|
Region A: Residues: [527-649] |
1 11 21 31 41 51
| | | | | |
1 IVYYKDAISF IKEIHKSIEL ISNLLFSKNR NEVLESMDFL VLADAFDIEL SEFGIKKMLH 60
61 LVWMKGTNDE GTSISVHLIE CYKQLFLTAP DSCNMQEKAA HIAKNLINLS IGASIADLAS 120
121 LEQ
|
| Detection Method: | |
| Confidence: | 14.05 |
| Match: | |
| Description: | No description for 1jpwA was found. |
|
Region A: Residues: [650-703] |
1 11 21 31 41 51
| | | | | |
1 LLGMMYEQKL IDQHVINILW AIYNSASKAS MQKEQNVNNR DSEKGFSKEQ IHGS
|
| Detection Method: | |
| Confidence: | 14.05 |
| Match: | |
| Description: | No description for 1jpwA was found. |
|
Region A: Residues: [704-887] |
1 11 21 31 41 51
| | | | | |
1 IIILGMLSLA DNEIALKGLE SLLNIGLGAV GLKDLTLCRY SCLALERMVP KRSTIITKAI 60
61 NQELEDVAVK KLYAIIINYT KDNEYYPMCE QALSALFTIS SKPDILATDL IREKTMMTFG 120
121 KPEEEDSILS LEQSSRVVSL SQLLFIVGQV AIKTLVYLEK CEAEFKKRKI EAETRNGKVK 180
181 NQGA
|
| Detection Method: | |
| Confidence: | 14.05 |
| Match: | |
| Description: | No description for 1jpwA was found. |
|
Region A: Residues: [888-945] |
1 11 21 31 41 51
| | | | | |
1 DVTNTTQDNG GDKELEMIGG TNEDDFTDAI QFVKENELLF GEKSILGKFC PIVEEIVS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.682 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.682 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.646 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.636 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.636 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.609 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.523 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.523 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.478 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [946-1176] |
1 11 21 31 41 51
| | | | | |
1 NSSRFSDPML QRTATLCLEK LMCLSSKYCE KSLPLLITVM EKSPDPTIRS NAVLGLGDMA 60
61 VCFNNLVDEN TDYLYRRLHD ENLMVQRTCL MTVTFLILAG QVKVKGQLGE MAKCLDNPDQ 120
121 GISDMCRLFF TELASKDNAI YNGFIDIFSN LSSDDLLGKE SFKKIIKFLL TFIDKERHQK 180
181 QLNEKLVGRL RKCETQKQWD DIAFVLNNLP YKNEDVTALL EQGFKVVSAK E
|
| Detection Method: | |
| Confidence: | 2.30103 |
| Match: | 1gw5B |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
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