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View Structure Prediction Details

Protein: YLR256W-A
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR256W-A.

Description E-value Query
Range
Subject
Range
YGR161C-D - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YG13B_YEAST - Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
643.0 [0..1] [435..1]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHP HISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 70.853872
Match: PF01021.10
Description: No description for PF01021.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [179-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDFPNWVKTY IKFLQNSNLG GIIPTVNGKP VRQITDDELT FLYNTFQIFA PSQFLPTWVK  60
   61 DILSVDYTDI MKILSKSIEK MQSDTQEAND IVTLANLQYN GSTPADAFET KVTNIIDRLN 120
  121 NNGIHINNKV ACQLIMRGLS GEYKFLRYTR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [329-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRHLNMTVAE LFLDIHAIYE EQQGSRNSKP NYRRNLSDEK NDSRSYTNTT KPKVIARNPQ  60
   61 KTNNSKSKTA RAHNVSTSNN SPSTDNDSIS KSTTEPIQLN NKHDLHLRPG TY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle