YRC Public Data Repository - Protein Structure Prediction

Protein:	SYM1
Organism:	Saccharomyces cerevisiae
Length:	197 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYM1.

Description	E-value	Query Range	Subject Range
gi\|190405313 - gi\|190405313\|gb\|EDV08580.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] SYM1 - Protein required for ethanol metabolism; induced by heat shock and localized to the inner mitochondr... SYM1_YEAST - Protein SYM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYM1 PE=1 SV=1 gi\|151941087 - gi\|151941087\|gb\|EDN59467.1\| stress-inducible yeast mpv17 [Saccharomyces cerevisiae YJM789]	3.0E-58	[1..197]	[1..197]
MPV17_MOUSE - Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=1 SV=1	5.0E-48	[1..182]	[1..176]
gi\|16902312 - gi\|16902312\|gb\|AAL30173.1\|AF320622_1 FKSG24 [Homo sapiens]	5.0E-48	[2..189]	[11..196]
gi\|18422298, gi\|... - gi\|18422298\|ref\|NP_568621.1\| peroxisomal membrane 22 kDa family protein [Arabidopsis thaliana], gi\|1...	3.0E-47	[2..181]	[77..249]
gi\|222618026, gi... - gi\|34904256\|ref\|NP_913475.1\| P0452F10.16 [Oryza sativa (japonica cultivar-group)], gi\|222618026\|gb\|E...	1.0E-45	[2..177]	[3..196]
gi\|220949422 - gi\|220949422\|gb\|ACL87254.1\| CG14777-PB [synthetic construct] FBpp0308652, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG14777 (CG14777, FBgn0026872). It is a prote...	2.0E-44	[4..190]	[13..192]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLHLYEAS LKRRPKTTNA IMTGALFGIG DVSAQLLFPT SKVNKGYDYK RTARAVIYGS  60
   61 LIFSFIGDKW YKILNNKIYM RNRPQYHWSN MVLRVAVDQL AFAPLGLPFY FTCMSIMEGR 120
  121 SFDVAKLKIK EQWWPTLLTN WAVWPLFQAI NFSVVPLQHR LLAVNVVAIF WNTYLSYKNS 180
  181 KVMEKDKVPV HYPPVVE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits