YRC Public Data Repository - Protein Structure Prediction

Protein:	SSP120
Organism:	Saccharomyces cerevisiae
Length:	234 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSP120.

Description	E-value	Query Range	Subject Range
SS120_YEAST - Protein SSP120 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSP120 PE=1 SV=1 SSP120 - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytopla... gi\|190405312 - gi\|190405312\|gb\|EDV08579.1\| protein SSP120 precursor [Saccharomyces cerevisiae RM11-1a] gi\|151941086 - gi\|151941086\|gb\|EDN59466.1\| conserved protein [Saccharomyces cerevisiae YJM789]	2.0E-73	[1..234]	[1..234]
SPCC613.03 - conserved fungal protein YCS3_SCHPO - Uncharacterized calcium-binding protein C613.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	3.0E-41	[39..230]	[20..185]
gi\|32404136, gi\|... - gi\|32404136\|ref\|XP_322681.1\| hypothetical protein [Neurospora crassa], gi\|28916757\|gb\|EAA26525.1\| hy... gi\|85068494 - gi\|85068494\|ref\|XP_955761.1\| hypothetical protein NCU03423 [Neurospora crassa OR74A]	1.0E-38	[37..230]	[34..203]
gi\|2612797, gi\|7... - gi\|7949094\|ref\|NP_058053.1\| nucleobindin 2 [Mus musculus], gi\|2612797\|emb\|CAA10858.1\| precursor NEFA...	3.0E-37	[42..210]	[231..402]
gi\|114636382, gi... - gi\|114636382\|ref\|XP_001172631.1\| PREDICTED: nucleobindin 2 isoform 9 [Pan troglodytes], gi\|114636380... NUCB2 - nucleobindin 2	8.0E-37	[42..210]	[231..402]
gi\|14549433 - gi\|14549433\|gb\|AAK66864.1\| calcium binding protein NEFA [Rattus norvegicus]	2.0E-36	[42..210]	[231..402]
DUOX1_CANLF - Dual oxidase 1 OS=Canis lupus familiaris GN=DUOX1 PE=1 SV=1	3.0E-35	[49..225]	[812..962]
gi\|2852361 - gi\|2852361\|gb\|AAC02081.1\| calcium binding EF-hand protein precursor [Drosophila melanogaster]	8.0E-34	[43..181]	[226..365]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLRGFVFS LAFTLYKVTA TAEIGSEINV ENEAPPDGLS WEEWHMDHEH QLKDYTPETF  60
   61 FALHDIKKKG FLDENDILSL YGLNREEIVG AGDGMGQHDE SEKIDNEMAK RVVSLIMRLL 120
  121 DVDDNTKITK EEYLQFAKRG NKFP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	1bjfA_
Description:	Neurocalcin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.15717243331439	bayes_pls_golite062009
ion binding	0.260156747006827	bayes_pls_golite062009
cation binding	0.258202247784115	bayes_pls_golite062009
metal ion binding	0.258202247784115	bayes_pls_golite062009
calcium ion binding	0.256031066757318	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [145-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLGVGVGHHS DFELEYEIHH WNKFHKDKDP DVKVVHKEDI EHELLHHEHE IEHEEEIQRG  60
   61 ASRATVITDD ELESRIELKN IPEKFKNGIF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: