YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR225C
Organism:	Saccharomyces cerevisiae
Length:	407 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR225C.

Description	E-value	Query Range	Subject Range
YL225_YEAST - Uncharacterized SVF1-like protein YLR225C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|207342932 - gi\|207342932\|gb\|EDZ70550.1\| YLR225Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405290 - gi\|190405290\|gb\|EDV08557.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YLR225C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|151941065 - gi\|151941065\|gb\|EDN59445.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..407]	[1..407]
SVF1_SCHPO - Survival factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=svf1 PE=3 SV=1 SPCC584.11c - Svf1 family protein Svf1	0.0	[60..407]	[51..380]

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Predicted Domain #1

Region A:
Residues: [1-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAIKKEKT KFAPVKEVLS EKDHANYTKF QDTSKLEWFC RTSNHKKFKS HSLLKAVRNP  60
   61 TETRIETQTL YFTDLTNGKC GLIQLLYSSV MGGIYKGFQL NFKIFKASSE ENSEEDIDIW 120
  121 ESFKIDNIKD FDTLKVESDN VTFHFVPLEN SSSSGFAQLL IKIDIPKGST SCLLKDLKVD 180
  181 ITVNLQEGFI INPDGSNYYL DKSISLEELA KRDSSSTSRK MIRHVFVPRG FCNGTISYKK 240
  241 NDKPVKLDLK DTPMLYLDAV QGLIPNKAAS KWNFLCFNGE KRSMMCIEFT TTKEYGSTTV 300
  301 TIWAVSDKDK ILEVGSSVND HAVKFPSTKE DKQNGWKYPT SISFPRGFEE SNLRLVNRYD 360
  361 IMSELPAFIR SIAENLANMK PFIYQFCQKS KFDDDEGVSI IESTFIN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [210-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKRDSSSTSR KMIRHVFVPR GFCNGTISYK KNDKPVKLDL KDTPMLYLDA VQGLIPNKAA  60
   61 SKWNFLCFNG EKRSMMCIEF TTTKEYGSTT VTIWAVSDKD KILEVGSSVN DHAVKFPSTK 120
  121 EDKQNGWKYP TSISFPRGFE ESNLRLVNRY DIMSELPAFI RSIAENLANM KPFIYQFCQK 180
  181 SKFDDDEGVS IIESTFIN