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View Structure Prediction Details

Protein: YLR224W
Organism: Saccharomyces cerevisiae
Length: 369 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR224W.

Description E-value Query
Range
Subject
Range
YLR224W - F-box protein and component of SCF ubiquitin ligase complexes involved in ubiquitin-dependent protei...
gi|207342931 - gi|207342931|gb|EDZ70549.1| YLR224Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190405289 - gi|190405289|gb|EDV08556.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
YL224_YEAST - F-box protein YLR224W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR224W PE=1 SV=1
0.0 [1..369] [1..369]

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Predicted Domain #1
Region A:
Residues: [1-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQSDSSLMD LPLEIHLSLL EYVPNELRAV NKYFYVLHNH SYKEKSLAWI AEDNYIWAVV  60
   61 KHSLCLYVKS LDPLRQHARE IIQETKEPGF NVPLCMTKYI ADSWYIVYNA LQYPGKIINM 120
  121 GWDKYTKSQD SNGSDSTSNF NSRPKERTLM QSLTALPVNF WSRRKDEPTP VNVWFYVKNA 180
  181 HVARYIPKII TEIGICNYGP KQIVASAGYI NELITSEGIY CVNLGHLPRL YDEQIFEGTG 240
  241 TTHLPLELKA IDRTDSDVCI NGDLVLLGYD FIPYQISKPW LLFRIEPVNS IEAIFNYSEC 300
  301 SFSYQFAWSL ACLQSEEKIS FPRDTIIGHG LPYKPSKLIR IFVYKHPEQK QDLGQEIALP 360
  361 NWNTPYLRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle