YRC Public Data Repository - Protein Structure Prediction

Protein:	RSA3
Organism:	Saccharomyces cerevisiae
Length:	220 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSA3.

Description	E-value	Query Range	Subject Range
gi\|207342937 - gi\|207342937\|gb\|EDZ70554.1\| YLR221Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405286 - gi\|190405286\|gb\|EDV08553.1\| ribosome assembly protein 3 [Saccharomyces cerevisiae RM11-1a] RSA3 - Protein with a likely role in ribosomal maturation, required for accumulation of wild-type levels of... RSA3_YEAST - Ribosome assembly protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA3 PE=1 SV...	1.0E-91	[1..220]	[1..220]
LPAH2_ARATH - P-loop NTPase domain-containing protein LPA1 homolog 2 OS=Arabidopsis thaliana GN=At3g45090 PE=2 SV=...	0.001	[23..167]	[531..694]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.001	[23..167]	[530..693]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGDISAIN IKSVKKNRRR KKRRTADVSS SDSSSSDPSS ESEKEEIQNG AIEEHVGENG  60
   61 KSDHVFSKGN DEDKQEDIAI EVSDVELTDE ESKDLKLNSK EVIDDLTKIS LSKIPEPTKS 120
  121 QNKEGFMNAS KIAENIKLAR EEYNELAENF VPKGKDKTKL REEYLNLLFE NYGDDINRLR 180
  181 AAPDFTNKSL SILADALQEG IGMFDIGELE LVLKNKEMEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits