YRC Public Data Repository - Protein Structure Prediction

Protein:	COA4
Organism:	Saccharomyces cerevisiae
Length:	150 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COA4.

Description	E-value	Query Range	Subject Range
gi\|44982746, gi\|... - gi\|45187962\|ref\|NP_984185.1\| ADR089Cp [Ashbya gossypii ATCC 10895], gi\|44982746\|gb\|AAS52009.1\| ADR08... gi\|44982746 - gi\|44982746\|gb\|AAS52009.1\| ADR089Cp [Ashbya gossypii ATCC 10895]	109.0	[0..62]	[137..5]
gi\|49527410 - gi\|49527410\|emb\|CAG61050.1\| unnamed protein product [Candida glabrata] gi\|50291333, gi\|... - gi\|50291333\|ref\|XP_448099.1\| unnamed protein product [Candida glabrata], gi\|49527410\|emb\|CAG61050.1\|...	104.0	[0..62]	[139..4]
gi\|50310587, gi\|... - gi\|50310587\|ref\|XP_455313.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644449\|emb\|CAG9802... gi\|49644449\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	102.0	[0..62]	[137..6]
gi\|109462508, gi... - gi\|109462508\|ref\|XP_001067013.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co...	100.0	[0..76]	[132..76]
gi\|189054277, gi... - gi\|7331256\|gb\|AAF60345.1\|AF242180_1 E2IG2 [Homo sapiens], gi\|189054277\|dbj\|BAG36797.1\| unnamed prote...	97.0	[0..76]	[132..26]
COA4_MOUSE - Cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Mus musculus GN=COA4 PE=3 SV=1	92.0	[0..76]	[132..17]
SPCC550.01c - CHCH domain protein YJV1_SCHPO - Coiled-coil-helix-coiled-coil-helix domain-containing protein C550.01c OS=Schizosaccharomyces pombe ...	91.0	[0..77]	[127..11]
gi\|109107789 - gi\|109107789\|ref\|XP_001110707.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co... CCDS8225.1_1 - null	90.0	[0..76]	[132..17]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFSSFFSH NKCPKQKKGP QPLKVVKGTS KSCAKQGKIK GKEKLWQAKT GRLVMSETGE  60
   61 TSEYYKQALE EYKEVQEDED PDVWDTRISK TGCYVENLAL QLCHAETGDW RQCFNEMALF 120
  121 RKCWEKNGNR ERVSTVDVDG TTSKDSEKKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits