YRC Public Data Repository - Protein Structure Prediction

Protein:	TUB4
Organism:	Saccharomyces cerevisiae
Length:	473 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TUB4.

Description	E-value	Query Range	Subject Range
TBB1_MAIZE - Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1	0.0	[3..445]	[2..430]
gi\|157767470 - gi\|157767470\|ref\|XP_001667215.1\| Hypothetical protein CBG16137 [Caenorhabditis briggsae AF16] tbb-4 - tubulin beta chain status:Partially_confirmed UniProt:P41937 protein_id:CAA86310.1 gi\|39596183, gi\|... - gi\|39596183\|emb\|CAE69820.1\| Hypothetical protein CBG16137 [Caenorhabditis briggsae], gi\|187026681\|em...	0.0	[3..459]	[2..444]
gi\|10242186 - gi\|10242186\|gb\|AAG15328.1\|AF255954_1 beta tubulin [Chionodraco rastrospinosus] gi\|10242160 - gi\|10242160\|gb\|AAG15315.1\|AF255553_1 beta tubulin [Notothenia coriiceps]	0.0	[3..445]	[2..430]
TBB4_XENLA - Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1	0.0	[3..445]	[2..430]
TBB_PARLI - Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1	0.0	[3..445]	[2..430]
TBB1_MANSE - Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1	0.0	[3..448]	[2..433]
gi\|2443346 - gi\|2443346\|dbj\|BAA22382.1\| beta-tubulin [Halocynthia roretzi]	0.0	[3..445]	[2..430]
gi\|19773428, gi\|... - gi\|19773428\|dbj\|BAB86853.1\| beta-tubulin [Bombyx mori], gi\|112983318\|ref\|NP_001036964.1\| beta-tubuli...	0.0	[3..448]	[2..433]

Back

Predicted Domain #1

Region A:
Residues: [1-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGEIITLQA GQCGNHVGKF LWSQLAKEHA IGTDGLSQLP DSSTERDDDT KPFFRENSRN  60
   61 KFTPRAIMMD SEPSVIADVE NTFRGFFDPR NTWVASDGAS AGNSWANGYD IGTRNQDDIL 120
  121 NKIDKEIDST DNFEGFQLLH SVAGGTGSGL GSNLLEALCD RYPKKILTTY SVFPARSSEV 180
  181 VVQSYNTILA LRRLIEDSDA TVVFDNASLL NISGKVFRNP NIDLQHTNQL ISTIISSVTN 240
  241 SIRFPSYMYS SMSSIYSTLI PSPELHFLSP SFTPFTSDYI HDDIAHKGHS SYDVMLDLLD 300
  301 PSNSLVSTAM NNPTYFNVYN TIIGNVEPRQ ISRAMTKLQQ RIKFPSWSSS AMHVNIGRRS 360
  361 PYLPLQPNEN EVSGMMLSNM STVVNVFENA CNTFDKVFAK GAFLNNYNVG DLFQSMQNVQ 420
  421 DEFAESREVV QSLMEDYVAA EQDSYLDDVL VDDENMVGEL EEDLDADGDH KLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1460.0
Match:	1ffxB_
Description:	Tubulin:stathmin-like domain complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits