YRC Public Data Repository - Protein Structure Prediction

Protein:	NMT1
Organism:	Saccharomyces cerevisiae
Length:	455 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NMT1.

Description	E-value	Query Range	Subject Range
NMT1_ARATH - Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=2	0.0	[7..455]	[12..434]
gi\|806885 - gi\|806885\|gb\|AAB60528.1\| myristoyl-CoA:protein N-myristoyltransferase [Cloning vector pACYC177/ET3d/...	0.0	[1..455]	[1..455]
NMT1 - N-myristoyl transferase, catalyzes the cotranslational, covalent attachment of myristic acid to the ... NMT_YEAST - Glycylpeptide N-tetradecanoyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	0.0	[1..455]	[1..455]
gi\|159125068 - gi\|159125068\|gb\|EDP50185.1\| peptide N-myristoyl transferase (Nmt1) [Aspergillus fumigatus A1163] NMT_ASPFU - Glycylpeptide N-tetradecanoyltransferase OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS... NMT_ASPFU - Glycylpeptide N-tetradecanoyltransferase OS=Aspergillus fumigatus GN=nmt1 PE=2 SV=1	0.0	[2..455]	[46..492]
NMT_EMENI - Glycylpeptide N-tetradecanoyltransferase OS=Emericella nidulans GN=swoF PE=1 SV=1 gi\|40739914, gi\|... - gi\|67526763\|ref\|XP_661443.1\| NMT_ASPFU Glycylpeptide N-tetradecanoyltransferase (Peptide N-myristoyl...	0.0	[1..455]	[44..492]
NMT_CANGA - Glycylpeptide N-tetradecanoyltransferase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 ... NMT_CANGA - Glycylpeptide N-tetradecanoyltransferase OS=Candida glabrata GN=NMT1 PE=3 SV=2	0.0	[7..455]	[3..451]
NMT_AJECA - Glycylpeptide N-tetradecanoyltransferase OS=Ajellomyces capsulatus PE=3 SV=1	0.0	[1..455]	[81..529]
myr1 (reserved) - N-myristoyltransferase 1 NMT_SCHPO - Glycylpeptide N-tetradecanoyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=n...	0.0	[10..455]	[23..466]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEDKAKKL ENLLKLLQLN NDDTSKFTQE QKKAMKDHKF WRTQPVKDFD EKVVEEGPID  60
   61 KPKTPEDISD KPLPLLSSFE WCSIDVDNKK QLEDVFVLLN ENYVEDRDAG FRFNYTKEFF 120
  121 NWALKSPGWK KDWHIGVRVK ETQKLVAFIS AIPVTLGVRG KQVPSVEINF LCVHKQLRSK 180
  181 RLTPVLIKEI TRRVNKCDIW HALYTAGIVL PAPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11000.0
Match:	1iicA_
Description:	N-myristoyl transferase, NMT
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [215-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STCRYTHRPL NWKKLYEVDF TGLPDGHTEE DMIAENALPA KTKTAGLRKL KKEDIDQVFE  60
   61 LFKRYQSRFE LIQIFTKEEF EHNFIGEESL PLDKQVIFSY VVEQPDGKIT DFFSFYSLPF 120
  121 TILNNTKYKD LGIGYLYYYA TDADFQFKDR FDPKATKALK TRLCELIYDA CILAKNANMD 180
  181 VFNALTSQDN TLFLDDLKFG PGDGFLNFYL FNYRAKPITG GLNPDNSNDI KRRSNVGVVM 240
  241 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11000.0
Match:	1iicA_
Description:	N-myristoyl transferase, NMT
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits