YRC Public Data Repository - Protein Structure Prediction

Protein:	VTA1
Organism:	Saccharomyces cerevisiae
Length:	330 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTA1.

Description	E-value	Query Range	Subject Range
gi\|808852 - gi\|808852\|gb\|AAA66933.1\| unknown protein	396.0	[0..1]	[330..1]
gi\|114609559 - gi\|114609559\|ref\|XP_001172031.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	318.0	[0..11]	[329..23]
VTA1_PONPY - Vacuolar protein sorting-associated protein VTA1 homolog - Pongo pygmaeus (Orangutan) VTA1_PONAB - Vacuolar protein sorting-associated protein VTA1 homolog OS=Pongo abelii GN=VTA1 PE=2 SV=1	311.0	[0..11]	[329..23]
gi\|48146531 - gi\|48146531\|emb\|CAG33488.1\| C6orf55 [Homo sapiens]	311.0	[0..11]	[329..23]
VTA1_MOUSE - Vacuolar protein sorting-associated protein VTA1 homolog OS=Mus musculus GN=Vta1 PE=1 SV=1	306.0	[0..11]	[329..23]
gi\|109072539 - gi\|109072539\|ref\|XP_001092926.1\| PREDICTED: similar to 1110059P08Rik protein isoform 2 [Macaca mulat...	301.0	[0..11]	[329..23]
gi\|73945621 - gi\|73945621\|ref\|XP_860959.1\| PREDICTED: similar to 1110059P08Rik protein isoform 2 [Canis familiaris...	295.0	[0..11]	[329..23]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNAARVVA TAKDFDKVGL GIIGYYLQLY AVELILSEED RSQEMTALAT ELLDTIEAFK  60
   61 KEIGGESEAE DSDKSLHVMN TLIH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.955	a.4.5	"Winged helix" DNA-binding domain

Predicted Domain #2

Region A:
Residues: [85-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQEKAKIYML NFTMSLYNEK LKQLKDGPWD VMLKRSLWCC IDLFSCILHL WKENISETST  60
   61 NSLQKRIKYC KIYLSKLAKG EIGSSDEKTL DYADFADDSE EIKDEDVDHQ TSDLENNNND 120
  121 KVEGLAPKDQ TTSYEPVDEV PEFIDDADSV NEEEQTVDKN EDAITKDEQQ VVKKEVDLTR 180
  181 PSAPSEPAAA EHKSYTKDEL TKIMDRASKI EQIQKLAKYA ISALNYEDLP TAKDELTKAL 240
  241 DLLNSI

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	11.0
Match:
Description:	No description for 1ldvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits