YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR179C
Organism:	Saccharomyces cerevisiae
Length:	201 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR179C.

Description	E-value	Query Range	Subject Range
YL179_YEAST - Uncharacterized protein YLR179C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR179C ... YLR179C - Protein of unknown function with similarity to Tfs1p; transcription is activated by paralogous prote...	1.0E-56	[1..201]	[1..201]
CET4_TOBAC - CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1	2.0E-46	[1..177]	[1..168]
SELFP_SOLLC - Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1	3.0E-46	[1..177]	[1..168]
gi\|4903139 - gi\|4903139\|dbj\|BAA77836.1\| CiFT [Citrus unshiu]	2.0E-44	[1..177]	[1..166]
OV16_ONCVO - OV-16 antigen OS=Onchocerca volvulus GN=OV16 PE=2 SV=2	7.0E-44	[7..176]	[35..194]
gi\|208609498, gi... - gi\|78058612\|gb\|ABB17667.1\| Hd3a [Oryza sativa (indica cultivar-group)], gi\|78058610\|gb\|ABB17666.1\| H...	1.0E-43	[2..177]	[4..168]
gi\|125578523, gi... - gi\|77553031\|gb\|ABA95827.1\| CENTRORADIALIS, putative, expressed [Oryza sativa (japonica cultivar-grou... gi\|5360180, gi\|1... - gb\|AAD42896.1\| Cen-like protein FDR1 [Oryza sativa], gi\|125535789\|gb\|EAY82277.1\| hypothetical protei... gi\|5360180 - gi\|5360180\|gb\|AAD42896.1\|AF159883_1 Cen-like protein FDR1 [Oryza sativa]	2.0E-43	[3..177]	[2..166]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAIVAKLN KEDIIKDTVK DLAFEILGEL SVSYVDSDDI KLGNPMPMEA TQAAPTIKFT  60
   61 PFDKSQLSAE DKLALLMTDP DAPSRTEHKW SEVCHYIITD IPVEYGPGGD IAISGKGVVR 120
  121 NNYIGPGPPK NSGYHRYVFF LCKQPKGADS STFTKVENII SWGYGTPGAG AYDYIKENNL 180
  181 QLVGANYYMV ENTTVDFNYD M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	146.9794
Match:	1kn3A_
Description:	Phosphatidylethanolamine binding protein, PEBP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits