YRC Public Data Repository - Protein Structure Prediction

Protein:	STM1
Organism:	Saccharomyces cerevisiae
Length:	273 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STM1.

Description	E-value	Query Range	Subject Range
gi\|710338 - gi\|710338\|gb\|AAA70169.1\| G4p2	2.0E-73	[1..273]	[1..273]
gi\|25504455, gi\|... - pir\|\|JC7700 38K ribosome-associated protein, Ray38p - yeast (Candida maltosa), gi\|13928591\|dbj\|BAB4...	8.0E-50	[3..221]	[7..227]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-44	[3..213]	[10..246]
SPBC16A3.08c - nuclear telomere cap complex subunit YBI8_SCHPO - Uncharacterized protein C16A3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16A3...	3.0E-41	[3..213]	[7..243]
gi\|18568253 - gi\|18568253\|gb\|AAL75987.1\|AF466204_2 putative gypsy-type retrotransposon RIRE2 protein [Sorghum bico...	0.002	[13..148]	[276..420]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPFDLLGN DVEDADVVVL PPKEIVKSNT SSKKADVPPP SADPSKARKN RPRPSGNEGA  60
   61 IRDKTAGRRN NRSKDVTDSA TTKKSNTRRA TDRHSRTGKT DTKKKVNQGW GDDKKELSAE 120
  121 KEAQADAAAE IAEDAAEAED AGKPKTAQLS LQDYLNQQAN NQFNKVPEAK KVELDAERIE 180
  181 TAEKEAYVPA TKVKNVKSKQ LKTKEYLEFD ATFVESNTRK NFGDRNNNSR NNFNNRRGGR 240
  241 GARKGNNTAN ATNSANTVQK NRNIDVSNLP SLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits