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View Structure Prediction Details

Protein: TIS11
Organism: Saccharomyces cerevisiae
Length: 285 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIS11.

Description E-value Query
Range
Subject
Range
CTH2_YEAST - mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIS11 PE=1 SV=1
TIS11 - mRNA-binding protein expressed during iron starvation; binds to a sequence element in the 3'-untrans...
gi|190406165 - gi|190406165|gb|EDV09432.1| zinc finger protein CTH2 [Saccharomyces cerevisiae RM11-1a]
gi|151941298 - gi|151941298|gb|EDN59676.1| conserved protein [Saccharomyces cerevisiae YJM789]
1.0E-54 [1..285] [1..285]
gi|22326848, gi|... - gi|9759138|dbj|BAB09623.1| zinc finger protein 3 [Arabidopsis thaliana], gi|4689376|gb|AAD27875.1|AF...
4.0E-35 [14..279] [103..359]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
9.0E-35 [14..238] [101..351]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAQLSYTRP ESQKTDLTSL FSTDQEQNPL NDYQYQINIR ELEEYYNKTI LNEDNIQETS  60
   61 SEISSAVSFS PPKNTNAIQP GLLYDPQLMN PFLPSAHLNS TAPTTFKKKL EVQINPDYV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKSSQLPLTS QNLQQLSQQK PKNDASFSSE KESSAQPKVK SQVQETPKQL YKTELCESFT  60
   61 LKGSCPYGSK CQFAHGLGEL KVKKSCKNFR TKPCVNWEKL GYCPYGRRCC FKHGDDNDIA 120
  121 VYVKAGTYCN VSSTSKQSDE KRSNGRGSAK KKNLNVKVKA LQRMTW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle