YRC Public Data Repository - Protein Structure Prediction

Protein:	TIS11
Organism:	Saccharomyces cerevisiae
Length:	285 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIS11.

Description	E-value	Query Range	Subject Range
CTH2_YEAST - mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIS11 PE=1 SV=1 TIS11 - mRNA-binding protein expressed during iron starvation; binds to a sequence element in the 3'-untrans... gi\|190406165 - gi\|190406165\|gb\|EDV09432.1\| zinc finger protein CTH2 [Saccharomyces cerevisiae RM11-1a] gi\|151941298 - gi\|151941298\|gb\|EDN59676.1\| conserved protein [Saccharomyces cerevisiae YJM789]	1.0E-54	[1..285]	[1..285]
gi\|22326848, gi\|... - gi\|9759138\|dbj\|BAB09623.1\| zinc finger protein 3 [Arabidopsis thaliana], gi\|4689376\|gb\|AAD27875.1\|AF...	4.0E-35	[14..279]	[103..359]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	9.0E-35	[14..238]	[101..351]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAQLSYTRP ESQKTDLTSL FSTDQEQNPL NDYQYQINIR ELEEYYNKTI LNEDNIQETS  60
   61 SEISSAVSFS PPKNTNAIQP GLLYDPQLMN PFLPSAHLNS TAPTTFKKKL EVQINPDYV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKSSQLPLTS QNLQQLSQQK PKNDASFSSE KESSAQPKVK SQVQETPKQL YKTELCESFT  60
   61 LKGSCPYGSK CQFAHGLGEL KVKKSCKNFR TKPCVNWEKL GYCPYGRRCC FKHGDDNDIA 120
  121 VYVKAGTYCN VSSTSKQSDE KRSNGRGSAK KKNLNVKVKA LQRMTW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits