YRC Public Data Repository - Protein Structure Prediction

Protein:	LCL2
Organism:	Saccharomyces cerevisiae
Length:	131 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCL2.

Description	E-value	Query Range	Subject Range
LCL2_ASHGO - Long chronological lifespan protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923... gi\|45201167, gi\|... - gi\|45201167\|ref\|NP_986737.1\| AGR072Wp [Ashbya gossypii ATCC 10895], gi\|44985950\|gb\|AAS54561.1\| AGR07...	135.0	[0..25]	[129..18]
LCL2_CANGA - Long chronological lifespan protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / N... gi\|49529158 - gi\|49529158\|emb\|CAG62824.1\| unnamed protein product [Candida glabrata]	132.0	[0..41]	[124..29]
gi\|49645107 - gi\|49645107\|emb\|CAG98679.1\| KLLA0F19844p [Kluyveromyces lactis] LCL2_KLULA - Long chronological lifespan protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707...	126.0	[0..13]	[128..11]
LCL2_CANAL - Long chronological lifespan protein 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LCL2 PE... LCL2_CANAW - Long chronological lifespan protein 2 OS=Candida albicans (strain WO-1) GN=LCL2 PE=3 SV=1 orf19.6630 - orf19.6630 CGDID:CAF0007071 Assembly 19, Contig19-10251 (12673, 13077) CDS, translated using codon t...	113.0	[0..8]	[129..6]
gi\|49655856\|emb\|... - unnamed protein product [Debaryomyces hansenii CBS767] LCL2_DEBHA - Long chronological lifespan protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 19...	98.0	[0..36]	[129..36]
LCL2_YARLI - Long chronological lifespan protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=LCL2 PE=3 ... gi\|49646465 - gi\|49646465\|emb\|CAG82832.1\| YALI0B07249p [Yarrowia lipolytica]	76.0	[0..28]	[129..18]
gi\|119183413, gi... - gi\|90301532\|gb\|EAS31163.1\| hypothetical protein CIMG_06642 [Coccidioides immitis RS], gi\|119183413\|r...	59.0	[0..4]	[92..2]
LCL2_ASPTN - Long chronological lifespan protein 2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=lcl2 ...	58.0	[0..26]	[92..29]
gi\|83771490 - gi\|83771490\|dbj\|BAE61622.1\| unnamed protein product [Aspergillus oryzae] LCL2_ASPOR - Long chronological lifespan protein 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=lcl2 PE=... LCL2_ASPFN - Long chronological lifespan protein 2 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL ...	57.0	[0..13]	[92..11]
gi\|42554502, gi\|... - gi\|46130864\|ref\|XP_389163.1\| hypothetical protein FG08987.1 [Gibberella zeae PH-1], gi\|42554502\|gb\|E...	56.0	[0..17]	[92..18]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSRWSIVL IFALFIFGST GVNAFFNFGH HQQQQQQQQQ SYEDQVLNNP CDGYLCPDTL  60
   61 TCVAQQKDCP CPFPKSQLKC VLPDNKFVCI SKPATHNEKF RAIYDDPVKG PKAKNKGFRD 120
  121 CGWVSDAYKN H

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits