YRC Public Data Repository - Protein Structure Prediction

Protein:	BOS1
Organism:	Saccharomyces cerevisiae
Length:	244 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BOS1.

Description	E-value	Query Range	Subject Range
BOS1 - v-SNARE (vesicle specific SNAP receptor), localized to the endoplasmic reticulum membrane and necess... BOS1_YEAST - Protein transport protein BOS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BOS1 PE=1...	6.0E-44	[1..244]	[1..244]
gi\|123995925, gi... - gi\|123995925\|gb\|ABM85564.1\| golgi SNAP receptor complex member 2 [synthetic construct], gi\|123981116... GOSR2 - golgi SNAP receptor complex member 2	1.0E-41	[1..243]	[1..211]
GOSR2_RAT - Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2 PE=1 SV=2	4.0E-40	[1..243]	[1..211]
GOSR2_MOUSE - Golgi SNAP receptor complex member 2 OS=Mus musculus GN=Gosr2 PE=1 SV=2	1.0E-37	[1..243]	[1..211]
GOSR1_CRIGR - Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1	3.0E-36	[23..242]	[9..249]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNALYNHAVK QKNQLQQELA RFEKNSVTAP ISLQGSISAT LVSLEKTVKQ YAEHLNRYKE  60
   61 DTNAEEIDPK FANRLATLTQ DLHDFTAKFK DLKQSYNENN SRTQLFGSGA SHVMDSDNPF 120
  121 STSETIMNKR NVGGASANGK EGSSNGGGLP LYQGLQKEQS VFERGNAQLD YILEMGQQSF 180
  181 ENIVEQNKIL SKVQDRMSNG LRTLGVSEQT ITSINKRVFK DKLVFWIALI LLIIGIYYVL 240
  241 KWLR

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Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits