YRC Public Data Repository - Protein Structure Prediction

Protein:	BUD20
Organism:	Saccharomyces cerevisiae
Length:	166 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BUD20.

Description	E-value	Query Range	Subject Range
gi\|49642445, gi\|... - gi\|50306675\|ref\|XP_453311.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642445\|emb\|CAH0040... gi\|49642445 - gi\|49642445\|emb\|CAH00407.1\| KLLA0D05621p [Kluyveromyces lactis]	212.0	[0..1]	[159..1]
gi\|49528085 - gi\|49528085\|emb\|CAG61736.1\| unnamed protein product [Candida glabrata] gi\|49528085, gi\|... - gi\|50292681\|ref\|XP_448773.1\| unnamed protein product [Candida glabrata], gi\|49528085\|emb\|CAG61736.1\|...	209.0	[0..1]	[144..1]
gi\|44981155, gi\|... - gi\|45185466\|ref\|NP_983183.1\| ABR234Cp [Ashbya gossypii ATCC 10895], gi\|44981155\|gb\|AAS51007.1\| ABR23... gi\|44981155 - gi\|44981155\|gb\|AAS51007.1\| ABR234Cp [Ashbya gossypii ATCC 10895]	185.0	[0..1]	[159..16]
gi\|68469293, gi\|... - gi\|68469293\|ref\|XP_721161.1\| hypothetical protein CaO19.10451 [Candida albicans SC5314], gi\|46443069... orf19.10451 - orf19.2934 CGDID:CAL0006015 Assembly 19, Contig19-20163 (23325, 22795) CDS, reverse complemented, tr...	149.0	[0..1]	[136..1]
BUD20_SCHPO - Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bud20 PE=3 SV=1 SPAC19B12.11c - zinc finger protein	149.0	[0..1]	[100..1]
CE22586 - status:Confirmed UniProt:Q9U239 protein_id:CAB60500.1	149.0	[0..3]	[97..8]
gi\|39584844, gi\|... - gi\|39584849\|emb\|CAE67744.1\| Hypothetical protein CBG13319 [Caenorhabditis briggsae], gi\|39584844\|emb... gi\|157773951, gi... - gi\|157773951\|ref\|XP_001665041.1\| hypothetical protein CBG13319 [Caenorhabditis briggsae AF16], gi\|15...	148.0	[0..3]	[97..8]
gi\|71042451 - gi\|71042451\|pdb\|1ZR9\|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger Protein	148.0	[0..10]	[119..10]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRYSVKRYK TKRRTRDLDL IYNDLSTKES VQKLLNQPLD ETKPGLGQHY CIHCAKYMET  60
   61 AIALKTHLKG KVHKRRVKEL RGVPYTQEVS DAAAGYNLNK FLNRVQEITQ SVGPEKESNE 120
  121 ALLKEHLDST LANVKTTEPT LPWAAADAEA NTAAVTEAES TASAST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.221849
Match:	1zr9A
Description:	Solution Structure of a Human C2H2-type Zinc Finger Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits