YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR065C
Organism:	Saccharomyces cerevisiae
Length:	181 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR065C.

Description	E-value	Query Range	Subject Range
YLR065C - Putative protein of unknown function; YLR065C is not an essential gene ENV10_YEAST - Late endosome and vacuole interface protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...	1.0E-58	[1..181]	[1..181]
gi\|3738323, gi\|2... - gi\|55740573\|gb\|AAV63879.1\| hypothetical protein [Arabidopsis thaliana], gi\|3738323\|gb\|AAC63664.1\| ex...	3.0E-55	[1..181]	[1..173]
gi\|17944976 - gi\|17944976\|gb\|AAL48551.1\| RE03116p [Drosophila melanogaster]	3.0E-47	[3..172]	[11..172]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-40	[2..172]	[5..164]
gi\|19353113 - gi\|19353113\|gb\|AAH24608.1\| Transmembrane protein 208 [Mus musculus]	8.0E-40	[1..131]	[1..138]
gi\|15426579 - gi\|15426579\|gb\|AAH13412.1\| Transmembrane protein 208 [Homo sapiens]	5.0E-39	[1..131]	[1..138]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKAGRKQA SSNAKIIQGL YKQVSLFLGM AIVRLFISRK VTIGQWIKLV ALNVPMFVAL  60
   61 YIIVLSGKPK YDGNRVVKQG IDLNDNTNLI SYFFDLIYLS LFGNIGIIAF RTFKFWWCLL 120
  121 LCPIYAGYKL YGLKNMFMPG AQQTQADNRS KNANEGQSKS KRQMKRERRG ETDSKIKYKY 180
  181 R

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits