YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR064W
Organism:	Saccharomyces cerevisiae
Length:	273 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR064W.

Description	E-value	Query Range	Subject Range
gi\|207343141 - gi\|207343141\|gb\|EDZ70697.1\| YLR064Wp-like protein [Saccharomyces cerevisiae AWRI1631] YLR064W - Putative protein of unknown function; highly conserved across species and orthologous to human TMEM3... gi\|151941232 - gi\|151941232\|gb\|EDN59610.1\| conserved protein [Saccharomyces cerevisiae YJM789] PER33_YEAST - Pore and endoplasmic reticulum protein of 33 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S... gi\|190406102 - gi\|190406102\|gb\|EDV09369.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	1.0E-82	[1..273]	[1..273]
TTS1_SCHPO - Tetra-spanning protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tts1 PE=1 SV=1 SPBC1539.04 - conserved eukaryotic protein	8.0E-64	[4..264]	[3..252]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVPRNRPMA PFGTIIKSRI KQPQFYWFIG HFLTIFNFIQ FHLSITSKQN QLSCYRRSLF  60
   61 YISVTYAIVL YQFFKSDQLK FNFTLLRQEM KKLDNLQYFA MLFILFLLSQ FNIIISGSLY 120
  121 SPVIFSIFHF LNYFKENLLP FLPLIPLNLK NLLNSKITVF IQNYNGFFLQ MAQVFEIICG 180
  181 LRVGLFLVPF NFFLLLVRRA NVSFEVVGTM LAGLTYVWFF KLRYLQSESM RQIFKQYVLR 240
  241 LDAYVSRTLP PYCSRLWNGY KNFVMTVFWK IPV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [145-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPLNLKNLLN SKITVFIQNY NGFFLQMAQV FEIICGLRVG LFLVPFNFFL LLVRRANVSF  60
   61 EVVGTMLAGL TYVWFFKLRY LQSESMRQIF KQYVLRLDAY VSRTLPPYCS RLWNGYKNFV 120
  121 MTVFWKIPV