YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR063W
Organism:	Saccharomyces cerevisiae
Length:	365 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR063W.

Description	E-value	Query Range	Subject Range
gi\|190406101 - gi\|190406101\|gb\|EDV09368.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YLR063W - Putative S-adenosylmethionine-dependent methyltransferase; green fluorescent protein (GFP)-fusion pr... gi\|151941231 - gi\|151941231\|gb\|EDN59609.1\| conserved protein [Saccharomyces cerevisiae YJM789] BMT6_YEAST - 25S rRNA (uridine(2843)-N(3))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	0.0	[1..365]	[1..365]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[43..364]	[25..318]
gi\|16944334 - gi\|16944334\|emb\|CAC18219.2\| conserved hypothetical protein [Neurospora crassa]	1.0E-46	[38..362]	[21..402]

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Predicted Domain #1

Region A:
Residues: [1-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLMRRFAFL TSSVYFKYIP IYSQYHYSSQ FPINMNPKKV AQLPVHNKST LPPQEIIDLF  60
   61 KITFLEELYP KDQDNEKSPL TEQIQAVKSD LYNRDYNAAF NNDSKRIAYC CRWSPSRATS 120
  121 YASVFAHFPE LLKIIRCEID DKDSNVLCIG GGAGGELVAL ASIFTLSRDF SSKFASALKI 180
  181 DNEVNKKPRN LNIQLVDIAD WSTVVEKLTA TIKSKWLYGD SEAESFNVNF THKDCLQMTE 240
  241 PQDIKIYQGL DLITLLFTTN ELFTQKKVES IKFLQRLNEN CAPGCHLLIL ESAGSYSHIT 300
  301 INNKKFPIQF LIDTILVGNR KDKGTTGPWS LVSENDSIWY RMDPKLDYSI PLENMRFFYR 360
  361 LYVKN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits