YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL22A
Organism:	Saccharomyces cerevisiae
Length:	121 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL22A.

Description	E-value	Query Range	Subject Range
gi\|34859197, gi\|... - gi\|34859197\|ref\|XP_345432.1\| PREDICTED: similar to RIKEN cDNA 3110001N18 [Rattus norvegicus], gi\|109...	186.0	[0..1]	[121..1]
gi\|108996186 - gi\|108996186\|ref\|XP_001091820.1\| PREDICTED: similar to 60S ribosomal protein L22 (Heparin-binding pr...	180.0	[0..1]	[112..42]
gi\|94384550, gi\|... - gi\|94384550\|ref\|XP_979887.1\| PREDICTED: similar to 60S ribosomal protein L22 (Heparin-binding protei...	179.0	[0..15]	[120..31]
gi\|113414782, gi... - gi\|30149441\|ref\|XP_114317.3\| PREDICTED: hypothetical protein XP_114317 [Homo sapiens], gi\|119598909\|...	179.0	[0..1]	[121..61]
gi\|15213770 - gi\|15213770\|gb\|AAK92160.1\|AF400188_1 ribosomal protein L22 [Spodoptera frugiperda]	176.0	[0..12]	[121..38]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNTSRKQK IAKTFTVDVS SPTENGVFDP ASYAKYLIDH IKVEGAVGNL GNAVTVTEDG  60
   61 TVVTVVSTAK FSGKYLKYLT KKYLKKNQLR DWIRFVSTKT NEYRLAFYQV TPEEDEEEDE 120
  121 E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.124939
Match:	PF01776.8
Description:	No description for PF01776.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.683	N/A	N/A	d.58.20	NAD-binding domain of HMG-CoA reductase
View	Download	0.677	N/A	N/A	b.54.1	Core binding factor beta, CBF
View	Download	0.662	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.630	N/A	N/A	d.109.1	Actin depolymerizing proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits