YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS0B
Organism:	Saccharomyces cerevisiae
Length:	252 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS0B.

Description	E-value	Query Range	Subject Range
RPSA - ribosomal protein SA gi\|123980486, gi... - gi\|61360849\|gb\|AAX41938.1\| laminin receptor 1 [synthetic construct], gi\|208967338\|dbj\|BAG73683.1\| ri... gi\|114602572, gi... - gi\|114602572\|ref\|XP_001158768.1\| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa lam...	0.0	[5..251]	[6..250]
RSSA_RAT - 40S ribosomal protein SA OS=Rattus norvegicus GN=Rpsa PE=1 SV=3	0.0	[5..251]	[6..250]
gi\|27805981, gi\|... - gi\|27805981\|ref\|NP_776804.1\| ribosomal protein SA [Bos taurus], gi\|163303\|gb\|AAA62713.1\| C10 protein...	0.0	[5..251]	[6..250]
RSSA_CRIGR - 40S ribosomal protein SA OS=Cricetulus griseus GN=Rpsa PE=1 SV=3	0.0	[5..251]	[6..250]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[5..251]	[6..250]
gi\|12846904 - gi\|12846904\|dbj\|BAB27355.1\| unnamed protein product [Mus musculus]	0.0	[5..251]	[6..250]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	0.0	[5..251]	[6..250]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPATFDLT PEDAQLLLAA NTHLGARNVQ VHQEPYVFNA RPDGVHVINV GKTWEKLVLA  60
   61 ARIIAAIPNP EDVVAISSRT YGQRAVLKFA AHTGATPIAG RFTPGSFTNY ITRSFKEPRL 120
  121 VIVTDPRLDA QAIKEASYVN IPVIALTDLD SPSEFVDVAI PCNNRGKHSI GLIWYLLARE 180
  181 VLRLRGALVD RTQPWSIMPD LYFYRNPEEV EQVAEEAAAA EEGEEEEVKE EVTEGQAEAT 240
  241 EWAEENADNV EW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1084.154902
Match:	1k5xB_
Description:	No description for 1k5xB_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits