YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR046C
Organism:	Saccharomyces cerevisiae
Length:	270 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR046C.

Description	E-value	Query Range	Subject Range
YL046_YEAST - Uncharacterized membrane protein YLR046C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... YLR046C - Putative membrane protein; member of the fungal lipid-translocating exporter (LTE) family of protein...	2.0E-91	[1..270]	[1..270]
gi\|16904126 - gi\|16904126\|gb\|AAL30767.1\|AF435426_1 parasitic phase-specific protein PSP-1 [Coccidioides posadasii]	1.0E-55	[36..243]	[39..259]
YEO2_SCHPO - Uncharacterized protein C17G6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G6... SPAC17G6.02c - RTA1-like protein	8.0E-51	[35..243]	[40..261]
gi\|6473968 - gi\|6473968\|dbj\|BAA87202.1\| Hypothetical protein [Schizosaccharomyces pombe]	4.0E-28	[110..243]	[1..147]
gi\|2072027 - gi\|2072027\|gb\|AAB53652.1\| symbiosis-related protein [Laccaria bicolor]	1.0E-9	[179..224]	[12..57]

Back

Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATHTSKRRI HRWENNELSE ENSTIIYFPA RGLMWTHFPF VLGICLEFVG YVLKIVFINS  60
   61 PSISTFIAQS VLLLIAPSLY ALSIFMLFSK MARLILMEAY MLIPAKFSTV SFVVADMIGR 120
  121 VLQAVGGGLL SSWNSRNTGR ILIIVGLFIQ IFCYTFLTFS QLFLHYKMKA TPSKIVRDSN 180
  181 EWFQYNFILL AGILLVNGRT IVRVVQFLMG LQSYIGQHEW CLYVFDTVLM FLLPLIFLAT 240
  241 FRARNLFKLQ DKSVNIQLNK LLDKESVSED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVVADMIGRV LQAVGGGLLS SWNSRNTGRI LIIVGLFIQI FCYTFLTFSQ LFLHYKMKAT  60
   61 PSKIVRDSNE WFQYNFILLA GILLVNGRTI VRVVQFLMGL QSYIGQHEWC LYVFDTVLMF 120
  121 LLPLIFLATF RARNLFKLQD KSVNIQLNKL LDKESVSED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits