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View Structure Prediction Details

Protein: RIC1
Organism: Saccharomyces cerevisiae
Length: 1056 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIC1.

Description E-value Query
Range
Subject
Range
RIC1 - Protein involved in retrograde transport to the cis-Golgi network; forms heterodimer with Rgp1p that...
RIC1_YEAST - Guanine nucleotide exchange factor subunit RIC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...
0.0 [1..1056] [1..1056]

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Predicted Domain #1
Region A:
Residues: [1-1056]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIKQSEKNT PKCLYKKKGK VRVLLTGSCK KLNTWKMHLW PVSPPQLLRI PPRNAELGEG  60
   61 TKIDDCNILQ SMTLPQANVL IMLTPTRVLI YNFKPMALVA SHERTMASLK EFGDNRSMKR 120
  121 SAPYNDIIEG LISKKDSQYL LWHQGKLIFY VMTDKNFLLT YQILKNCTNE IIFKEYGIPV 180
  181 IEPLLMSEEE ANSAEYDYNN DDDTLTVFDK NSSSRIIQNG FGITKEKGFL HFLSNQENID 240
  241 ELPVKKLELR LKVVLKFDYE IIDMIGIKTF SKVGDGRYEE VLIVLFPHGL QILTISDFKV 300
  301 SKSSLVEVKK GSKTIVCNKQ LMVLSHDSVE KQTIVSIIDI EKQAVEAIPL TDTPDELLTC 360
  361 LEVNGYLVVV YKEKIICFDT RIKKVSHSWK PPFVIKLCDK INDKILLLVS EDSVNIHFYT 420
  421 EFGNLLFATY FDEDDYNGDN NNDNSKDKNE KKAAEYKISD FVCLDKSLIT VSHSGKYQVW 480
  481 KLWEEIKQTQ FDFRNPKCYV LTNTNNDVII YSPVTSSSIN NDNLQVIKLP TKTFNNHIAF 540
  541 VKINSSLRLF ATYVSNKNIL LIHNLETNMW SSFADQNVLD LHWLGDNYLV CHMKNDDGST 600
  601 NLKCLQIPLQ EANPDVELSD YVMWEYNVPE NTIVFSLHVN TLSRYKLLKM KSKNHNASEK 660
  661 QPDALLKTAE IILVTDTQTI VFDVISTVHP CGLNIIKKFY QYLKINIPID VLPNKIEWII 720
  721 NMKEGLLFFA DRKFIKLGKV DGGGWQTLTL LDNIEKIIDV IRDEIFVVQG HNYVVYSLED 780
  781 LWDDKKPLVS IPIEEDLYPI STTPETATTH TLHCIFNARF SKLVVKHQIY LDQLILAKLE 840
  841 DNTDLEDISH NYRFLKPYKF ALEKILSTKI LRSDSLDDIL KLIKMYDNTD PEHNISPPTH 900
  901 SGMLEIISNC LRKIETKYWN HLFTNLKMTP RDLLALCIEE NEAKMLGVLL LVFLNYDEKD 960
  961 LGDDLHFKKS DLGTEESKAL NDNSTKKSEK SVTNLLKDEE LMLKVLELLV TSAANATDPI1020
 1021 KATDSWDMCF QLIRLLKELD RENNTQLVQK ALERFK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle