YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR036C
Organism:	Saccharomyces cerevisiae
Length:	203 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR036C.

Description	E-value	Query Range	Subject Range
gi\|190406076 - gi\|190406076\|gb\|EDV09343.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YL036_YEAST - Uncharacterized protein YLR036C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR036C ... YLR036C - Putative protein of unknown function predicted to have transmembrane domains; interacts with HSP90 b...	4.0E-86	[1..203]	[1..203]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEAELSATE SQDEIPKSNS LLIIEKLTKA VCSLYFINCF MVPSVDNLIE KYPKAIIIKI  60
   61 IDMILGAVTI SLVIIVFFLY RKNGHFKNEN KTKPKRCSKV VCPSCAARKK YPKWFQLKYL 120
  121 LLVSMTAFSF YFCTKIRFFF KTDQTINLHR LSQLFRLQLG WICTTALLFY FYDALILHSG 180
  181 FIEGYRCVNG KGAMSEGKTG QLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits