YRC Public Data Repository - Protein Structure Prediction

Protein:	SDO1
Organism:	Saccharomyces cerevisiae
Length:	250 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDO1.

Description	E-value	Query Range	Subject Range
gi\|207343196 - gi\|207343196\|gb\|EDZ70733.1\| YLR022Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190406063 - gi\|190406063\|gb\|EDV09330.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151941190 - gi\|151941190\|gb\|EDN59568.1\| conserved protein [Saccharomyces cerevisiae YJM789] SDO1 - Essential protein involved in 60S ribosome maturation; ortholog of the human protein (SBDS) responsi... SDO1_YEAST - Ribosome maturation protein SDO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDO1 PE...	1.0E-84	[1..250]	[1..250]
SBDS_MOUSE - Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4	7.0E-76	[1..245]	[1..243]
SPAC4F8.03 - SBDS family ribosome maturation protein SDO1_SCHPO - Ribosome maturation protein sdo1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdo1 PE=3...	1.0E-73	[1..242]	[1..242]
FBpp0303093, CG8... - This gene is referred to in FlyBase by the symbol Dmel\CG8549 (CG8549, FBgn0035714). It is a protein...	4.0E-73	[3..233]	[4..230]
gi\|7523664, gi\|2... - gi\|7523664\|gb\|AAF63104.1\|AC006423_5 Unknown protein [Arabidopsis thaliana], gi\|30725592\|gb\|AAP37818....	1.0E-72	[5..243]	[7..241]
sbds-1 - status:Confirmed UniProt:Q23202 protein_id:AAK29863.2	2.0E-70	[3..244]	[5..245]
gi\|18977942, gi\|... - gi\|18977942\|ref\|NP_579299.1\| putative RNA-associated protein [Pyrococcus furiosus DSM 3638], gi\|1889...	2.0E-68	[10..231]	[3..219]
SDO1_ARCFU - Ribosome maturation protein SDO1 homolog OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM ... SDO1_ARCFU, Y491... - UPF0023 protein AF_0491 - Archaeoglobus fulgidus, Ribosome maturation protein SDO1 homolog OS=Archae...	1.0E-67	[10..232]	[2..219]
SDO1_PYRAB - Ribosome maturation protein SDO1 homolog OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB06080 PE=... SDO1_PYRAB, Y608... - UPF0023 protein PYRAB06080 - Pyrococcus abyssi, Ribosome maturation protein SDO1 homolog OS=Pyrococc...	2.0E-67	[10..231]	[3..219]
SDO1_PYRHO - Ribosome maturation protein SDO1 homolog OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / ... Y1552_PYRHO, YF5... - (O59220) Hypothetical UPF0023 protein PH1552, UPF0023 protein PH1552 - Pyrococcus horikoshii, Riboso...	3.0E-67	[10..231]	[3..219]

Back

Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPINQPSGQI KLTNVSLVRL KKARKRFEVA CYQNKVQDYR KGIEKDLDEV LQIHQVFMNV  60
   61 SKGLVANKED LQKCFGTTNV DDVIEEIMHK GEIQLSEKER QLMLNKVNNE MLTIVSAKCI 120
  121 NPVSKKRYPP TMIHKALQEL KFSPVINKPA KLQALEAIKL LVSKQIIPIV RAKMKVKVAI 180
  181 SEPSRQPELI EKISKLIASS PGESTKPELD PWTCTGLIDP VNYRDLMTLC DKKGTVQVLD 240
  241 MAVIDNTTHN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	175.886057
Match:	PF01172
Description:	Shwachman-Bodian-Diamond syndrome (SBDS) proteins

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits